Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0581 ATGACAGTTGAACCGAGGGTTGAAGACCCAAATGATCAATTTCCGATTGGTATGCGGGTTCTCGCCGTTGATGATGACCCTACCTGTCTTAGGCTCTTGGACACTCTGCTTCGTCGATGCCAGTACCATGTTACGACAACTAGTCAGGCAATCACAGCATTGAAGATGCTGAGAGAAAACAAAAACCAGTTTGATTTGGTTATCAGTGATGTGCATATGCCTGATATGGACGGTTTCAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTAATAATGCTATCGGCAAATGATGACCCGAAGCTTGTGATGAAGGGAATTACCCATGGGGCTTGTGATTATTTGCTGAAACCTGTTCGAATTGAGCAGCTAAAGAACATATGGCAACATGTAATCAGGAGAAGGAGGTTTGATCCTAGGGACCAGAATAATTCTGACAGTCGAGACAAGCGTCAAGGACCTGGTGAAGGAGGACAAGGGTCCAGTGAACCAGGGAATCCTGATCATGGGAAGCTTAATAAAAAGCGGAAGGACCAGAATGAAGATGACGATGAGGAAAATGATGAGAATGGACATGATAATGAGGACCCATCAAGTCAGAAGAAGCCTCGTGTTGTTTGGTCTGTAGAGCTGCATCGCAAATTTGTTGCAGCTGTTAATCAGTTGGGCATTGACAGGGCTGTACCTAAAAAGATATTAGATTTGATGAATGTTGAGAAGCTTACAAGAGAAAATGTAGCAAGCCATCTCCAGAAATATAGGCTTTACCTAAAAAGGATCAGCTGTGTGGCAAATCAGCAAGCTAATATGGTTGCAGCCTTGGGCAGTACAGATTCTACCTATTTGCATTCACTTAATGGCCTTGGAAATTTCTACAATTTGTCTGGATCTGGGCAGTTGCCAAACTCTACTTTCAGATCCTTCCCACCTAGTGGAATGCTCGGTAGATTGAACACTCCTTCTGGTATGGGTATGCATTGCCTTTCTTCTTCAGAGATGGTTCAACTGGGACATTTGCAAAACTCAAGCAATCCTATTAACAGTGGGGGTAAATTCCAGCCGGTGTTACTACCTGGAAACCAAAATGGTATTATACTTCAAGGGATGCCAATGTCCTTAGAACTTGAGCAATTGCAACATAATAAAGGCATCATCCGTGTTGGAGAGCTCTCTACTACTATTGGGGATTCAACTGTTTTCCCTGCTTCAAGTGGCTTCCCAGATACAAAAATGACTTCCAGTAGGTCATCCAGCTCTCTTCTTGTTGCTGCAAACAGTCCCTTAATGTTACAAGGACACTCCCAAGAGAACCAAAGAAGAGGAGGGTTGAGAAATCAAAATTCTGCTACATTGTTAAACGCAGAGCTTCCTTCTTCATTTCCAGATCATGGTAGATGTAATGACAACTGGTCAACTGCTGTTCAGCCATCTGCGATCCAATCAAGTTCTTTTCCATTAAGTGACTGCTTTAAACAGGCTACTTTGCATCCTAGTAACTTGAGAGACAATATCTCTTCAGTGACCCTGCAAAGTGGGACTAATCTACGTGATGTTTCTTGTGTCACTTCAATGCCTCCTCCACTGCCAGATTCAAGAACAGATTTAGAATGTCAAGCAATGACAATCAGTAGTAATTCTGTAAAAATTATGAATTATTCCCCAAAAGTGTGGGATGACCATAAACACAAGCTCTCTCACCATTCAAGTCTCGGATGCAGCTCAGCAAACTCTTTGATCCCTGCTCCTGGAGTAATGGGTACATTTGACCAGGGTTTGGACCTGAAAAACACAATATCTGACAGAAATATGGATTTCAATTTGATGGGGGAGTCGAATTTTGTCAATCCCTTGCCCATGCAGCAGAATGCAGTTGAGGAATCAGCTTCAGATACAGCATTGCAGTTGAAGCAAGGTTGCACCTTGGGGCAAAGAAAACCACAAAGCAGCTATGCTTCTAATAATGTTGGTTCCTTGGAAGATCTAGTGAGTGCAATGATGAAACAGCACAAAATGAATGGTTGA 2028 0.43 MTVEPRVEDPNDQFPIGMRVLAVDDDPTCLRLLDTLLRRCQYHVTTTSQAITALKMLRENKNQFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANDDPKLVMKGITHGACDYLLKPVRIEQLKNIWQHVIRRRRFDPRDQNNSDSRDKRQGPGEGGQGSSEPGNPDHGKLNKKRKDQNEDDDEENDENGHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDRAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSTDSTYLHSLNGLGNFYNLSGSGQLPNSTFRSFPPSGMLGRLNTPSGMGMHCLSSSEMVQLGHLQNSSNPINSGGKFQPVLLPGNQNGIILQGMPMSLELEQLQHNKGIIRVGELSTTIGDSTVFPASSGFPDTKMTSSRSSSSLLVAANSPLMLQGHSQENQRRGGLRNQNSATLLNAELPSSFPDHGRCNDNWSTAVQPSAIQSSSFPLSDCFKQATLHPSNLRDNISSVTLQSGTNLRDVSCVTSMPPPLPDSRTDLECQAMTISSNSVKIMNYSPKVWDDHKHKLSHHSSLGCSSANSLIPAPGVMGTFDQGLDLKNTISDRNMDFNLMGESNFVNPLPMQQNAVEESASDTALQLKQGCTLGQRKPQSSYASNNVGSLEDLVSAMMKQHKMNG* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0581 675 CDD REC_typeB_ARR-like 20 134 - -
Vvi4g0581 675 MobiDBLite consensus disorder prediction 140 155 - -
Vvi4g0581 675 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Vvi4g0581 675 Gene3D - 18 182 - -
Vvi4g0581 675 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vvi4g0581 675 FunFam Two-component response regulator 200 263 - -
Vvi4g0581 675 PIRSF RR_ARR_type-B 1 674 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi4g0581 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Vvi4g0581 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Vvi4g0581 675 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vvi4g0581 675 SMART REC_2 18 130 IPR001789 GO:0000160
Vvi4g0581 675 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Vvi4g0581 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 389 IPR045279 GO:0009736
Vvi4g0581 675 MobiDBLite consensus disorder prediction 140 206 - -
Vvi4g0581 675 SUPERFAMILY CheY-like 17 142 IPR011006 -
Vvi4g0581 675 Gene3D - 200 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0581 Vvi-Chr4 5601743 5606426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0581 1 675 Response Regulator Gene Family AT2G25180 45.864 5.36e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi4g0581 Response_reg 1.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0581 - K14491 vvi:100250889 1269.99