Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0579 ATGAGTAGTTTGGTTGAGAGACTACGTGTAAGGTCAGATCGAAGGCCAATTTACAATTTAGATGAATCAGATGATGACGCTGATCTTGTGCATGGGAAATCTGGCATGTCTCAGGAGAAGTTTGAAAAGATTGTTAGGAGTGATGCGAAAGATGACTCATGTCAAGCCTGTGGAGAAAGTGGGAATCTTTTGAGCTGTGAAACTTGTACTTATGCTTACCATCCCAAGTGTTTACTTCCACCACTGAAAGCTCCTCTTCCTAGCAACTGGAGGTGTCCTCAATGTGTTAGTCCTCTAAATGATATTGACAAGATACTGGACTGTGAAATGCGCCCTACTGTTGCTGGCGATAGTGATGCCTCTAAGCTGGGATCTAAGCAAATATTTGTAAAACAGTATCTTGTAAAGTGGAAGGGATTATCTTATCTGCATTGCACATGGGTGCCTGAGAAAGAGTTCATTAAAGCTTTCAAGACGCATCCTCGGTTAAAGACTAAAGTAAACAACTTTAATCGTCAAATGGCATCAAACAATAACTCTGAAGAAGACTTTGTTGCGGTTCGGCCTGAATGGACTACTGTTGATCGAATTATTGCTTGCAGGGGAAATGATGATGAGAGGGAGTATCTTGTAAAATGGAAAGAACTTTCCTATGATGAATGTTATTGGGAATTTGAATCAGACATTTCTGCATTTCAACCTGAAATCGAAAGATTTAATAAAATTCAGTCTAGGTCTCGCAAACTTTCGTCTAGTAAGCAGAAGGTTACCATTCGTGATATTAGTGACTCAAAAAGGAAACAGAGAGAATTTCAACAGTTTGAACATAGTCCTGAATTTCTTTCTGGAGGCTCACTACATCCATATCAGCTTGAAGGATTGAACTTCCTAAGGTTCTCTTGGGGCAAACAAACTCATGTAATACTTGCAGATGAGATGGGCCTGGGCAAAACTATACAAAGTATTGCCTTTTTAGCATCTCTTTTTGAAGAGAACGTCTCTCCACATTTAGTTGTAGCGCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAGATGAATGTTGTTATGTATGTTGGTTCTTCCCATGCTCGTTCTGTTATACGGGATTATGAATTTTACTTTCCCAAAAGTCATAAGAAGATCAAGAAAAAAAAATCTGGTCAAATTGTCACTGAAAGCAAGCAAGACAGGATAAAATTTGATGTTCTCCTGACATCTTATGAAATGATAAACTTGGATTCTGCATCATTGAAACCAATTAAGTGGGAGTGTATGATTGTTGATGAAGGTCATCGTCTCAAGAATAAGGATTCGAAGTTGTTTCTATCACTGAAGCAATATTTGAGTAAACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTCATGCTCATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTCAAAGATATCAATCAAGAGGAGCAAATTTCAAGGCTTCATAAAATGTTGGCTCCCCATCTTCTTAGAAGAGTGAAGAAAGATGTCATGAAAGAACTGCCTCCTAAAAAGGAGCTCATTTTACGTGTTGAATTAAGTAGCAAGCAGAAAGAATATTACAAGGCCATTCTGACTCGTAACTATCAGATCCTAACTCGTCGGGGTGGTGCACAGATCTCTCTTATAAATGTGGTTATGGAATTGCGCAAGCTCTGTTGTCACCCTTATATGTTAGAAGGAGTTGAACCAGATATTGAGGATGCAACTGAAGCTTACAAACTACTGCTGGAATCTTCTGGGAAATTGCAACTGTTGGACAAAATGATGGTGAAGCTTAAAGAGCAAGGACATAGGGTTCTTATATATTCACAGTTTCAACACATGCTGGACTTACTCGAAGATTACTGTACTTATAAGAAATGGCAGTATGAACGGATTGATGGAAAGGTTGGCGGGGCGGAAAGACAAGTTCGAATAGATCGGTTTAATGCAAAGAATTCTTCAAGATTTTGTTTCTTACTTTCTACTAGAGCAGGTGGTTTGGGAATAAACCTTGCAACTGCTGACACAGTTATAATATATGACAGTGATTGGAATCCTCATGCTGATTTGCAAGCAATGGCTAGGGCTCATCGACTTGGGCAAACCAACAAGGTACTGATTTATAGACTCATAACAAGGGGGACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTTTTAGAGCATCTTGTTGTTGGGAGGCTCAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGACATCATAAGGTACGGGTCAAAGGAGCTATTTGCTGATGAGAATGATGAAGCAGGAAAATCCCGCCAAATTCATTATGACGATGCTGCAATAGATAGATTACTTGATCGAGAACAAGTTGGGGATGAAGAGGCTACATTGGACGATGACGAAGATGATGGGTTTTTAAAAGCATTTAAGGTAGCAAATTTTGAATATATTGATGAAGTAGAAGCTGTAGTAGAAGAGGAAGTACAAAAGGCTCCTGTGGAGAACAAAGCTGCTGTCAACAATTCTGAAAGAACAAGTTATTGGGAAGAGTTATTAAGAGACAGATATGAAGTTCATAAAATTGAAGAGTTTAATGCTTTGGGCAAGGGAAAGAGAAGCCGTAAACAGATGGTATCTGTTGAAGAAGATGACCTTGCTGGTTTGGAAGATATAAGCTCTGAAGGTGAGGATGATAACTATGAAGCTGATCTGACTGATGGTGAAACAACATCAGCTGGAGTTCCATCTGGGAGAAAGCCTTACAGAAAGAAAGCTCGGGTGGACAATATGGAACCACTCCCTCTGATGGAAGGTGAAGGCAGATCATTTAGAGTACTGGGATTCAATCAAAATCAAAGGGCTGCATTTGTCCAAGTTTTGATGAGGTTTGGGGTTGGGGAGTTTGACTGGGCAGAGTTTACACCCCGCTTGAAGCAGAAAACTTTTGAAGAAATTAAAGATTATGGGACTCTCTTCTTGGCTCACATTTCTGAAGATATAACTGACTCACCAACCTTTTCAGATGGAGTTCCGAAAGAAGGACTTCGAATACCTGATGTACTTGTTAGGATTGCAGTCCTGCTTTTAGTAAGGGACAAGGTAAAACTTGCTTTAGAAAAGCCAGGGGCTCCTCTTTTCGAGGATGATATTGTATCACGCTTCCCTGGATTGAAAGGTGGAAGACATTGGAAGGAGGAGCATGATTTATTACTACTGCGTGCAGTAATAAAGCATGGATATGGAAGATGGCAAGCTATCGTTGATGACAAAGACTTGAAAGTTCAAGAAGTGATTTGTCAAGAGCAGAATCTCCCCTTCATAAATTTTCCTGTCCCAGGAGGTTCTCAAGCACCAGATGGGACCCATACAGCTAATTCTGAAGCACCTGGAAACCAGACAAAAGGAACAGGCAGTGGGACTGATTTAGCCCCTGATGTTACACAGGGAGGAACTGATGCTTCAAACAGAGCACAGCTGTATCAAGATTCTTCTGTCTTATATCATTTTAGAGAAATGCAGAGAAGACAGGTTGAATTTATTAAGAAAAGGGTGCTTCTATTGGAAAAAGCTCTCAACACCGAGTACCAGAAAGAATACTTCGGTGACATAAAATCAAATGAGATTGCAAGTGAAGATCCTGAAAATGAAGCCAAGGTTATAGACATATCTAGTCCAAGCAATGTAGAGGTTGATGCTCAAATCATGGACCAGTTGCCTCGTATAGAAGTAATTGCTTCAGAAGAAATTTCAGCGACTGCTTGTGATGATAAACCAGAACGTGCAGAAATGGCTCGGCTTTATAACGAGATGTGCAAGGTACTTGCAGAAAATGTCCATGAGTCAGTTCAGTCATACTTAGCTAACCAACCAGCAAGTTTACAGTTGAGAAAGAAACTTCTTCCTCTCGAAGCAATTTGTGAAGACATAAACAGAATACTCTCACCCCAACTGCAGAATCCTGCCACTTCAGAACAGACTCTGCTAGGTTCAAATCAACAATCACTGGCTGAAGCGCCAACCAGTGTTGCTGGAAGTAGTTCACCATCCATCCAGCAGCAAGATGATCAGAGGCCTAGTGCTGAGCAGGATACCGAAATGAGGGATGCATTAACAAAATCTGATCCAAGAAAGGATAGTAGTCAATCAACAAAGTCTGACTCAGAAAAAGAATCAAGTAAATCCCCATGTGATGTTCCCACGTCTGCAGATTCACATTCACCTCAAGTAGAACCTACTTGTGTTCCTGCAGGAACTGGAGAAGATGTGGAAATGGAGGAAAAGAAGAATGAGGCTGATGCTGCACCAGATGGAAGCAAACACAAGTCTGAGCCTGGGATCATAATTTTGGATGATTAA 4419 0.4051 MSSLVERLRVRSDRRPIYNLDESDDDADLVHGKSGMSQEKFEKIVRSDAKDDSCQACGESGNLLSCETCTYAYHPKCLLPPLKAPLPSNWRCPQCVSPLNDIDKILDCEMRPTVAGDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFIKAFKTHPRLKTKVNNFNRQMASNNNSEEDFVAVRPEWTTVDRIIACRGNDDEREYLVKWKELSYDECYWEFESDISAFQPEIERFNKIQSRSRKLSSSKQKVTIRDISDSKRKQREFQQFEHSPEFLSGGSLHPYQLEGLNFLRFSWGKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSHARSVIRDYEFYFPKSHKKIKKKKSGQIVTESKQDRIKFDVLLTSYEMINLDSASLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYLSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDATEAYKLLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGDEEATLDDDEDDGFLKAFKVANFEYIDEVEAVVEEEVQKAPVENKAAVNNSERTSYWEELLRDRYEVHKIEEFNALGKGKRSRKQMVSVEEDDLAGLEDISSEGEDDNYEADLTDGETTSAGVPSGRKPYRKKARVDNMEPLPLMEGEGRSFRVLGFNQNQRAAFVQVLMRFGVGEFDWAEFTPRLKQKTFEEIKDYGTLFLAHISEDITDSPTFSDGVPKEGLRIPDVLVRIAVLLLVRDKVKLALEKPGAPLFEDDIVSRFPGLKGGRHWKEEHDLLLLRAVIKHGYGRWQAIVDDKDLKVQEVICQEQNLPFINFPVPGGSQAPDGTHTANSEAPGNQTKGTGSGTDLAPDVTQGGTDASNRAQLYQDSSVLYHFREMQRRQVEFIKKRVLLLEKALNTEYQKEYFGDIKSNEIASEDPENEAKVIDISSPSNVEVDAQIMDQLPRIEVIASEEISATACDDKPERAEMARLYNEMCKVLAENVHESVQSYLANQPASLQLRKKLLPLEAICEDINRILSPQLQNPATSEQTLLGSNQQSLAEAPTSVAGSSSPSIQQQDDQRPSAEQDTEMRDALTKSDPRKDSSQSTKSDSEKESSKSPCDVPTSADSHSPQVEPTCVPAGTGEDVEMEEKKNEADAAPDGSKHKSEPGIIILDD* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0579 1472 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vvi4g0579 1472 Pfam SNF2-related domain 307 586 IPR000330 GO:0005524|GO:0140658
Vvi4g0579 1472 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Vvi4g0579 1472 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 155 IPR023780 -
Vvi4g0579 1472 Gene3D - 1040 1219 - -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1139 1175 - -
Vvi4g0579 1472 Pfam CHD subfamily II, DUF1087 845 905 IPR009463 -
Vvi4g0579 1472 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vvi4g0579 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Vvi4g0579 1472 CDD SF2_C_SNF 607 733 - -
Vvi4g0579 1472 SMART helicmild6 638 722 IPR001650 -
Vvi4g0579 1472 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Vvi4g0579 1472 Pfam CHD subfamily II, SANT-like domain 937 1069 IPR009462 GO:0003677|GO:0006338
Vvi4g0579 1472 SMART DUF1087_2 843 908 IPR009463 -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 904 925 - -
Vvi4g0579 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Vvi4g0579 1472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Vvi4g0579 1472 CDD CD1_tandem 98 170 - -
Vvi4g0579 1472 SMART ultradead3 282 495 IPR014001 -
Vvi4g0579 1472 Pfam PHD-finger 54 96 IPR019787 -
Vvi4g0579 1472 CDD CD2_tandem 190 241 - -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1130 1175 - -
Vvi4g0579 1472 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1441 1472 - -
Vvi4g0579 1472 Gene3D - 98 196 - -
Vvi4g0579 1472 SMART chromo_7 99 162 IPR000953 -
Vvi4g0579 1472 SMART chromo_7 190 244 IPR000953 -
Vvi4g0579 1472 SMART DUF1086_2 913 1072 IPR009462 GO:0003677|GO:0006338
Vvi4g0579 1472 Gene3D - 278 528 IPR038718 -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 904 944 - -
Vvi4g0579 1472 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Vvi4g0579 1472 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 43 1420 - -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1415 1429 - -
Vvi4g0579 1472 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1345 1378 - -
Vvi4g0579 1472 ProSiteProfiles Chromo and chromo shadow domain profile. 192 241 IPR000953 -
Vvi4g0579 1472 SUPERFAMILY Chromo domain-like 181 245 IPR016197 -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1345 1472 - -
Vvi4g0579 1472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Vvi4g0579 1472 Gene3D - 197 241 - -
Vvi4g0579 1472 Gene3D - 529 753 IPR027417 -
Vvi4g0579 1472 SMART PHD_3 53 96 IPR001965 -
Vvi4g0579 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 519 IPR027417 -
Vvi4g0579 1472 MobiDBLite consensus disorder prediction 1379 1414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0579 Vvi-Chr4 5521515 5591381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0579 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.636 7.32e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi4g0579 SNF2_N 1.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0579 K11643 - vvi:100261114 2855.47