Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0574 ATGGCCAAGTGCGAGCGAAACGACGTCGGATCGTTAGTCCTCAACCGCGCCGCTGGCGGTGGAAGTTTTCGTCTATTTTCGTCATCCTCCGGTGCGACATTTCGCAAGAAAGTATTTGATTTCGTTCGTTGTGGTGGTTCCCGCCATTTCCGGGAAGATGAGGTGGCAGGCGTTCAGCCCTTGCCGCTGGCTCCGGAGCCGGCGCAAGAGCGATCGGAGCCGAGGAGGAAGGGATCGGAGAAGCTGTCGGAGCTGTTGAAGAATTCGTGGGAGGGTTGGGGTGAAGAGGATGGGAATGCTGAAGAGACGAAGAGGAAGACTGAGGCGTTTGAGGAGGTGAAGCGCGTGGTAAGGGATCTTCAGGTTGGGGAAGGAGTGAGGAAGAGTGGAGGTGCGGTGGAGGTGAGGAGGCGTGCGAAGGAAGACTTGGAAGCTCGAACTACGCTCGCAATGCTCGGAGCCATTCCTCCTCTGGTAGGGATGCTAGATTCTGAGGATCAGGAGTCTCAGATCGCGTCATTGTACGCTCTTCTTAATCTCGGGATCGGAAACGATGAGAACAAAGCAGCCATTGTCAAAGCAGGAGCTGTCCACAAGATGCTAAAGCTCATTGAATCTCCAAATGAACTCCCAAATTCAGCTGTCTCTGAAGCAGTTGTCGCAAATTTTCTTGGCTTAAGTGCATTAGACTCAAACAAGTCAATTATTGGTTCTTCTGGGGCCGTTCCAATTTTAGTAAGAACCCTAAAAAATTTGGACAAGACCAGCAGTTCCCAAGCAATGCAAGACTCTTTGAGAGCGCTATACAATCTTTCCATATTACCTTTGAACATTTCAGTAATTCTGGAAACTGATTTTGTCTCATTTCTGCTAAATACATTGGGGGACATGGAAGTGAGTGAAAGAATCCTCTCAATTTTAAGCAATGTGGTATCTACCCCAGAAGGTAGAAAGGCTATCAGCACTGTGCCAGATGCATTCCCTATTTTGATTGATGTTCTGAATTGGAATGACTCTACGGGTTGCCAGGAGAAGGCATCTTATATCTTGATGGTAATGGCACACAAATCTTATGGAGATAGGCAGGCTATGATTGATGCTGGAATTGTATCTTCCCTACTTGAATTGTCTCTTTTAGGCAGCACATTAGCACAAAAGAGGGCCTCCCGGATTTTGGAGTGTTTGAGGGTTGATAAAGGGAAGCAGGTTTCAGAAAGTTATGGTGGCAGTTTGGGTAGCGTTGGAGTATCTGCTCCCATATGTGGATCATCTTCCTCATCTGCAGATCCAAATCTCAGTTCCAAGGAGGCTTTCGAGGAGGAGGAAGACATGATGAGTGAGGAGAAAAAGGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAATAACATGAGGAGAATTGTTAAGAGGGCCAATTTGCCGCAAGACTTTGTTCCATCGGATCATTTCAAGGCACTCACATCAAGTTCAACTTCAAAGAGCTTACCATTTTGA 1494 0.4739 MAKCERNDVGSLVLNRAAGGGSFRLFSSSSGATFRKKVFDFVRCGGSRHFREDEVAGVQPLPLAPEPAQERSEPRRKGSEKLSELLKNSWEGWGEEDGNAEETKRKTEAFEEVKRVVRDLQVGEGVRKSGGAVEVRRRAKEDLEARTTLAMLGAIPPLVGMLDSEDQESQIASLYALLNLGIGNDENKAAIVKAGAVHKMLKLIESPNELPNSAVSEAVVANFLGLSALDSNKSIIGSSGAVPILVRTLKNLDKTSSSQAMQDSLRALYNLSILPLNISVILETDFVSFLLNTLGDMEVSERILSILSNVVSTPEGRKAISTVPDAFPILIDVLNWNDSTGCQEKASYILMVMAHKSYGDRQAMIDAGIVSSLLELSLLGSTLAQKRASRILECLRVDKGKQVSESYGGSLGSVGVSAPICGSSSSSADPNLSSKEAFEEEEDMMSEEKKAVKQLVQQSLQNNMRRIVKRANLPQDFVPSDHFKALTSSSTSKSLPF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0574 497 Gene3D - 136 471 IPR011989 -
Vvi4g0574 497 Coils Coil 438 458 - -
Vvi4g0574 497 MobiDBLite consensus disorder prediction 56 82 - -
Vvi4g0574 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 195 IPR000225 GO:0005515
Vvi4g0574 497 MobiDBLite consensus disorder prediction 434 450 - -
Vvi4g0574 497 MobiDBLite consensus disorder prediction 422 453 - -
Vvi4g0574 497 SMART arm_5 274 312 IPR000225 GO:0005515
Vvi4g0574 497 SMART arm_5 356 397 IPR000225 GO:0005515
Vvi4g0574 497 SMART arm_5 142 182 IPR000225 GO:0005515
Vvi4g0574 497 SMART arm_5 229 273 IPR000225 GO:0005515
Vvi4g0574 497 SMART arm_5 184 228 IPR000225 GO:0005515
Vvi4g0574 497 SUPERFAMILY ARM repeat 131 398 IPR016024 -
Vvi4g0574 497 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 20 497 - -
Vvi4g0574 497 Pfam Armadillo/beta-catenin-like repeat 148 180 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0574 100 396 U-box Gene Family AT2G23140 30.435 2.86e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0574 - - vvi:100266281 881.708