Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0568 ATGGAAGAGGTCAGGAGTATGCTGTTTGGGAAGTATGAAACGGGGAGGTTGCTCGGGAAAGGGACCTTCGCCAAGGTCTACTATGCTAAGCATATGGTGTCCGGGGAGAGCGTTGCGATCAAAGTAATCAACAAAGACTATGTGAAAAAGGAAGGAATGATGGAGCAAATCAAACGAGAAATATCGGTGATGCGATTAGTACGACACCCCAATATCGTTGAGCTCAAAGAAGTGATGGCCACAAAGACCAAGATCTTCTTTGTGATGGAGTACGTTCGCGGCGGCGAGCTATTCGCCAAGGTCGCCAAGGGGAAACTGAAAGAAGATCAGTCCAGAAAGTACTTTCAGCAGCTCATCAGCGCTATCGATTTCTGTCACAGCCGTGGCGTCTCTCACCGTGATCTCAAGCCGGAAAATCTTCTCCTGGATGAAAACGAAGACCTTAAAGTGTCTGATTTTGGGTTGTCGGCGTTGCCGGAGCAGCTCCGGAACGATGGACTTCTTCACACACAGTGTGGGACTCCGGCATATGTCGCGCCGGAGGTTTTGAGGAAGAAAGGGTATGATGGGGCCAAAGCAGATATGTGGTCTTGTGGGGTTATCCTCTTTGTACTTCTTGCAGGGTTTCTACCTTTTCAAGAAGAGAATCTGATGAAGATGTATAGGAAGGTTTTCAAGGCTGAATATCAGTTCCCACCATGGTTTTCATCAGAAGCCAAAAGACTAATATCAAAGCTCCTGGTAGCTGACCCTCAAAGACGGATAACAATACCGGCAATAATGCGAGTTCCCTGGTTCCGAAAAGGGTTTTCAAGGCCTGTTGCTTTTTCAATAGAAGAACCATTCCCGGACAAGCCTGAGGACAGTGATACACTAAAGCTTGAAGCTGCAAAGAGTACCAATTCCCCGTCCCCGGCCTTCTTCAATGCATTTGAGTTCATTTCCTCGATGTCATCGGGCTTCGACTTATCAAGCTTGTTTGAAAATCAGAAGAAGGCTGGATCAATGTTTACCTCCAAGTGCTCGGCGGCTGCGATCATGGCCAAAATTGAGCTGGTGGCCAAGGGTTTGAAGTTTAGGGTTGCAAAGGTGAAGGACTTCAAGTTGAAGCTTCAAGGGCAATCAGAGGGCCGGAAAGGGAGGTTATCGTTGACGGCGGAGGTGTTCGAGGTGGCGCCTGAAGTCGCCATCGTCGAGCTCTTGAAGTCGGCTGGCGATACGTTGGAGTATGCCAAATTCTGTGAGGAAGACGTTAGGCCTGCATTGAAAGACATTGTTTGGACATGGCAAGGTGACAATCACAATGGTAATGTTAGCAACAATATTGTTGAATGTGAAAATTAA 1344 0.4762 MEEVRSMLFGKYETGRLLGKGTFAKVYYAKHMVSGESVAIKVINKDYVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMEYVRGGELFAKVAKGKLKEDQSRKYFQQLISAIDFCHSRGVSHRDLKPENLLLDENEDLKVSDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRKKGYDGAKADMWSCGVILFVLLAGFLPFQEENLMKMYRKVFKAEYQFPPWFSSEAKRLISKLLVADPQRRITIPAIMRVPWFRKGFSRPVAFSIEEPFPDKPEDSDTLKLEAAKSTNSPSPAFFNAFEFISSMSSGFDLSSLFENQKKAGSMFTSKCSAAAIMAKIELVAKGLKFRVAKVKDFKLKLQGQSEGRKGRLSLTAEVFEVAPEVAIVELLKSAGDTLEYAKFCEEDVRPALKDIVWTWQGDNHNGNVSNNIVECEN* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0568 447 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0568 447 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Vvi4g0568 447 CDD STKc_SnRK3 11 265 - -
Vvi4g0568 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 423 - -
Vvi4g0568 447 Gene3D Kinase associated domain 1, KA1 310 428 - -
Vvi4g0568 447 Pfam NAF domain 305 363 IPR004041 GO:0007165
Vvi4g0568 447 CDD CIPK_C 309 423 - -
Vvi4g0568 447 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vvi4g0568 447 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0568 447 SUPERFAMILY Protein kinase-like (PK-like) 8 313 IPR011009 -
Vvi4g0568 447 FunFam Non-specific serine/threonine protein kinase 5 302 - -
Vvi4g0568 447 ProSiteProfiles NAF domain profile. 303 328 IPR018451 GO:0007165
Vvi4g0568 447 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0568 447 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524
Vvi4g0568 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vvi4g0568 447 Gene3D Transferase(Phosphotransferase) domain 1 4 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0568 Vvi-Chr4 5291969 5293312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0568 7 447 CBL-interacting serine-threonine protein kinases AT5G25110 71.973 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi4g0568 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0568 - - vvi:100259329 870.152