Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0567 ATGGAATTCGAATTTATTGATACTTCTCTTGGTTTGGACCTCAAGCCTAATCCTCCTGCGAACAGCCTTGGCGACTTCTCTCCTAAGAGAGGAGATTGTGTGGATGTGGATGTGGAAAGGAAACCCTCTCCAGTATTGAAAGAAGACACTGGTGGTTTGGTAGAAGAGTTGCGTAGGATGAGCACTGAGAACAAGAAGCTAACTGAATTGCTATCAATCATGTGTGAGAATTACAATGCTTTGCACAATCACTTGAAGGAATTGATGAGAAAGAACTCTGATCATCAGCTCTTTAATTCAAGGAAGAGGAAGGCTGAAAGTGAGGATAATATCAATAATATTCATGGGAGTAGTGGAAATAATACTGAGAGTATCTCTAGTGATGAAGATTCAAGTAAGAAGCCAAGAGAAAGCACCAAGGGAAAGGTCTCTAGAGTTGTTGTAAAGACAGAGAAGTCTGACAATAGCCTGCTTCTGAAGGACGGATACCAATGGAGAAAGTATGGGCAGAAGGTCACCAGAGATAACCCTTCTCCCAGAGCCTACTTCAAGTGCTCCTTTGCCCCAACCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGCTGAAGATCAGTCTCTTCTGATAGCCACTTATGAGGGGGAGCATAACCACCAGCAACCTTCACCAGTTGAGGTGTCATTAGGCTTCAACCGAGCTGCCACTCCTGCTTCAGTCCTCAGCCCAGCCTCCATGGTCTCTCCACGCCCAACAGTAACTCTGGACTTGATCCAACCTGGATTAGCTAACAACACTGCCAAAAATTCAGTCCATGACGTTAAAGAAAAGCCAATAGTCCAGCAGTTCTTAGTCGAACAAATGGCTTCTTCCTTGACAAGAGATCCCAGTTTCACTGCAGCCCTTGCAGCAGCCATTTCCGGAAGAATTTTAGACCAAACTCAGATAGAAAAATGGTGA 954 0.4455 MEFEFIDTSLGLDLKPNPPANSLGDFSPKRGDCVDVDVERKPSPVLKEDTGGLVEELRRMSTENKKLTELLSIMCENYNALHNHLKELMRKNSDHQLFNSRKRKAESEDNINNIHGSSGNNTESISSDEDSSKKPRESTKGKVSRVVVKTEKSDNSLLLKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQPSPVEVSLGFNRAATPASVLSPASMVSPRPTVTLDLIQPGLANNTAKNSVHDVKEKPIVQQFLVEQMASSLTRDPSFTAALAAAISGRILDQTQIEKW* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0567 317 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 308 IPR044810 GO:0003700
Vvi4g0567 317 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0567 317 MobiDBLite consensus disorder prediction 111 126 - -
Vvi4g0567 317 FunFam WRKY transcription factor 40 144 221 - -
Vvi4g0567 317 SUPERFAMILY WRKY DNA-binding domain 156 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0567 317 Gene3D WRKY domain 142 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0567 317 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0567 317 MobiDBLite consensus disorder prediction 127 147 - -
Vvi4g0567 317 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0567 317 MobiDBLite consensus disorder prediction 96 110 - -
Vvi4g0567 317 MobiDBLite consensus disorder prediction 96 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0567 Vvi-Chr4 5266032 5267827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0567 50 316 WRKY Transcription Factor Family AT1G80840 51.601 1.22e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0567 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0567 - - vvi:100264507 613.609