Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0566 ATGATGGCTGCTCTTGATGGCGGTATCCGCAACCACAAGGTTGAAGTTCTTAAAATAGAGTTGGAGCGTTTGAGGAAAGAAAATGAAGATCTTCGGCTTGGTCTAGAAATTATGGGTAGTAAATATGAAGTTCTTCAAGCTCATCTTCAGAAGAATATGGCCACCATTTCACCTGATCATGGATCAAGCCAAGACTCAAACAAGAGGCCGAGGACCGAAGAAGTTTCGGTAGCCAAGGCATCACAAGTGTTTGTGAGAACCAATCCAAAAGACAAAAGCTTAACAGTGAAAGATGGATTTCAATGGAGGAAATATGGGCAGAAGATTACCAAGGATAATCCATCTCCTCGAGCTTACTTCAGATGTTCCATGGCTCCACAATGCCCAGTGAAAAAGAAGGTGCAGAGATGCATGGAGGATAGCTCAATTCTGGTTGCAACCTATGAAGGAGCACACAACCATGAACCACCTCATGATGCACCAGCAGGTGGTTCCTCATATTCACCAGATAGCCCAATCAAGGGCTTGGTGGCTAATTTCCCATGTCCAACCACAGTAGATCCATTTCAACCTACTGTTACCCTCGATCTAACTCTTTCCGGGACCGGGACCGGGACGGGTCAGGAGAAGAGAAGGCCTCAAAATTTTATGGAAGATTACCGGAAGAGCAACTGTGGCAGAGTTGAAGAATATGTGGCATCCTTAACTAAAGATACTAACTTCACCCTTGCTTTGGCTGCTGCGGTCGCACGATCCATCACCGACCAGCCTAAACCAACAAAAGCTTGA 789 0.4563 MMAALDGGIRNHKVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPDHGSSQDSNKRPRTEEVSVAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQCPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTVDPFQPTVTLDLTLSGTGTGTGQEKRRPQNFMEDYRKSNCGRVEEYVASLTKDTNFTLALAAAVARSITDQPKPTKA* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0566 262 MobiDBLite consensus disorder prediction 54 77 - -
Vvi4g0566 262 Pfam WRKY DNA -binding domain 97 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0566 262 MobiDBLite consensus disorder prediction 151 170 - -
Vvi4g0566 262 FunFam WRKY transcription factor 40 81 158 - -
Vvi4g0566 262 SUPERFAMILY WRKY DNA-binding domain 93 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0566 262 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 253 IPR044810 GO:0003700
Vvi4g0566 262 Coils Coil 14 34 - -
Vvi4g0566 262 Gene3D WRKY domain 79 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi4g0566 262 ProSiteProfiles WRKY domain profile. 98 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi4g0566 262 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0566 Vvi-Chr4 5247592 5248818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0566 5 256 WRKY Transcription Factor Family AT1G80840 37.209 2.03e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi4g0566 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0566 - - vvi:100266177 518.85