Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0557 ATGGAAGAAGTTTGTCTCAACAGTGAGCCCGTATTTGATGAAGGTGATGAGTATGAGATTGAGGGAGACAGCATCACGGTGGAACATTATGATGAAACTAGCGAAACACAGTCTAAGAAGGAACCCCCACTACCTACCGTGGGTTTGGAGTTTGATTCTTTTGATGAAGCTTATGATTTTTATAATCTTTATGCTAAGGAGCAGGGTTTTGGCATTCGAGTAAGCAATTCGTGGTTTAGATCAAAGAGAAAAGAACGATATAGAGCAAAACTTAGCTGCAGCAGTGCTGGTTTCAAGAAAAAGAGCGAAGCAAACCATCCAAGACCAGAAACAAGAACTGGCTGTCCTGCAATGATAGTCATTAGACTGGTGGACTCTAAAAGATGGAGAATAGTTGAAGTTGAGCTTGAACACAACCATCAGGTGAGTCCACAAATCAAGCGATTTTATAAGTCACATAAGAAAATGATTCTTGCAGCCAAAAAAGCACAGCCCCCATCAGAGCCTGTCACAGAAGTACATACTATTAAGTTGTATCGAACAGCTGTTGTGGATTCCGGGTGCAATGGGTACACAAATGTTAATGAGGGAGAGAGTTTGAATCCTGTTGATCACTCTAAGCATTTGGATCTTAAAGAAGGGGATGCACATGCAGTTTACAACTACTTCTGTCGAATGAAGAAGCACCTGAAAGAAGCCATGGCAGATCTAGAATCAAGAACTTCAAGTTTTGAGCTGAAAACAAAATGTAATTTCGAGGTGCAGCTTTCCAAGATGTACACAAAGGCGATATTTATGAAGCTCCAATCAGAGGTTGAGGGAATGTACTCTTGCTTCAACACAAAGCAGGTGAGCGTTAATGGACCGATAATAACATACATGGTCAAGGAAAGAGTTGAAGTTGAAGGAAAGGAGAAAGTGGTTAGGCATGCATTAACTGTCCTAAATTATAATGGTGTGGAAGAAATCCCGAGTCGTTACATTTTGCCTCGATGGAGTAAGGACTTCAAGTGCAGGTATGTTGTAGATCATGGCTCTGGTGATATTGATGTGTATAACCCAGTGCATTGGCAAAATAATCTATATAAACGTGCCATTCCCCTTGTGGAAGAAGGGGCACTGTCTCAACAACATTATAAAGTAGTATTGGATGAATTGCAAGGGTTGTTGAACAAGTTCAGTGTTTTAGAGGAAATGTGA 1200 0.4075 MEEVCLNSEPVFDEGDEYEIEGDSITVEHYDETSETQSKKEPPLPTVGLEFDSFDEAYDFYNLYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANHPRPETRTGCPAMIVIRLVDSKRWRIVEVELEHNHQVSPQIKRFYKSHKKMILAAKKAQPPSEPVTEVHTIKLYRTAVVDSGCNGYTNVNEGESLNPVDHSKHLDLKEGDAHAVYNYFCRMKKHLKEAMADLESRTSSFELKTKCNFEVQLSKMYTKAIFMKLQSEVEGMYSCFNTKQVSVNGPIITYMVKERVEVEGKEKVVRHALTVLNYNGVEEIPSRYILPRWSKDFKCRYVVDHGSGDIDVYNPVHWQNNLYKRAIPLVEEGALSQQHYKVVLDELQGLLNKFSVLEEM* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0557 399 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 228 392 IPR031052 GO:0006355
Vvi4g0557 399 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0557 Vvi-Chr4 5156753 5158759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi4g0557 FAR1 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0557 K17604 - vvi:100242411 471.855