Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0551 ATGCAAAAGAACACCTTTGAATCTTTGATCTGGAATATATCGAATAAAATATTTAATGATATGGATATTATTTCGATACAATTACATTTACATTTGATAAAATTAAGATTAAGATTTTGGGCTGATATTTATAGGAGGTCCGGTCCGCCTTCACAAATCATCAGCAACATCATCATCCTCCTCTGCAGGATTGTAAACAAAGCAGTCTGCTTGTTCTTCGTATTCTTATTAATATTCTTGCGTTTGAAAACTTTTGATTCTCAATCCGCACTTACCGCCTTTTTTTTTACCTTTAATTCGTCGAAATCATCAACAATTTCCACCTCTGCCGTCGGAATGGCTGGAAAAGCTGCTGCAACTCAATCAGCTGCTGCTTTTGAGTTTGAACTTTTTGAAGGAGATCCTGATCATCTTAGGACTGTTGTAGCAACACCAAACCTGATTAGTCCATGGATTGATCCTGCAACATTGAAACTGAGACACAGAATTGGTAGAGGGCCCTTTGGCGATGTCTGGTTAGCAACCCAACATCTGTTCGCAGAAGATTATGACGAGTATCATGAAGTGGCTATCAAAATGTTACATCCAATCAAAGAGGATCTTATGAAGGTTGTATTGGATAAATTGGAAAACTTATTTTCTAAATGCCAAGGATTAAAAGGTGTTTGCTGGCTACATGGGATTTCGGTTATAAGTGGAAAGATTTGTATTATCATGAAATTCTATGAGGGATCTCTTGGTGACAAAATGGCTCATCTTAAAGGAGGGAAGCTTTCATTGCGTGACATTTTGAGGTATGGGATCGATTTGGCACAAGCAATTTTAGAACTGCACTCAAAAGAGATTCTGGTTCTTAACCTTAAGCCTTATAACTTCCTACTTGATCAAAATGATGAAGCAATTCTCGGAGATTTGGGGATTCCTTATTTACTGCTTCAGATTCCATTGCCAAGCTCAGATATAGCTCGAAGACTTGGAACTCCAAACTACATGGCTCCAGAACAGTGGCAACCAGAAGTAAGAGGTCCCCTGTCCTTAGAGACCGACTCATGGGGATTTGGTTGCAGCATTGTGGAGATGTTGACTGGTGTTCAGCCTTGGTGTGGAAAGTCAGTTGAGGAGGTCCATGACTCAGTTGTCAGAAAGCAAGAAAAACCATTTATTCCAAGTGGTCTTCCTCCTGCTGTCGAGAGAGTTATCATTGGTTGCTTTGCTTATGACTTCAGGAGTCGACCTTCAATGAAAAATATATTAGAAGCATTCAAAAGCTCTGAGAATGCAGTCTACAGTGATGGAGGCTGGACAGGGCTTGGGAGTAGAACAATTACGGACAATTTTATTGTTAATGGTTACTCAGAATGGTTTCTCTCTAAAGAGAATTTCCTAGTGGGTGACCTGGTGCGTTCGAGGAAGCCACCGCACTCATGCAAACCTGAGAACATGGATGTGCCGGGAGGAACCGTGGTGGGTTTAGAACGGGACTCTGATCAAGATGGTTACGTTCTGGTGAGGGTGCTCGGCATCCATGATCCTTTAAGGGTTCATAAATATACATTGGAGCGGGTTACATCAGGCTTAGCAGCAGGGGATTGGGTGCGTTTGGAGACTGAAGACAGGAGGAATTCACGGGTGGGTATTCTTCATTCTATCAGTCGTGATGGCAGCGTGGATGTTGGATTTATTGGGATGGAGACTCTTTGGAAGGGAAGTTGTACCAATCTCCAGATGGCAGAATCTTATTGCAAGGGGCAGTTTGTGAGGCTCAAGGCAAACGTTTTAAGCCCACGATTTGAATGGCCTCGGAAGAGGGGCGGGGCTTGGGCCACAGGAAGGATTTGGCAGGTCCTTCCAAATGGATGCTTGGTTGTTAACTTCCCAGGGAGGCTGCCTATAGGAGATGAATGCAGCAGCTTCTTGGCAGACCCAGCTGAAGTGGAACTGGTTTCTTTTAATACTAGTCCTGGATTGGTGAAGAAGTATCAACATCTGGAGGATTTTCACTGGGCTGTGAGGCCACTTCTAATTGCACTGGGCCTATTTTCAGCAATGAAGTTTGGCATTTTTGTTGGAAAGAAGATAGGAATAGGAAGGTCAAAGGAGAAGAGAGGCCAGAGCACTATGACACAGAACGAGAGTCAACGTTTGGACAATCAGACTGCCGGCAATGCAGCTTGGCTTCCTCAAACAGTGGCAGTCTCCTCAGAGAAGGTGTTAGCTCAGGTAATGGCCGGTAAATTTCTGCCCAAGAGCTAA 2253 0.4328 MQKNTFESLIWNISNKIFNDMDIISIQLHLHLIKLRLRFWADIYRRSGPPSQIISNIIILLCRIVNKAVCLFFVFLLIFLRLKTFDSQSALTAFFFTFNSSKSSTISTSAVGMAGKAAATQSAAAFEFELFEGDPDHLRTVVATPNLISPWIDPATLKLRHRIGRGPFGDVWLATQHLFAEDYDEYHEVAIKMLHPIKEDLMKVVLDKLENLFSKCQGLKGVCWLHGISVISGKICIIMKFYEGSLGDKMAHLKGGKLSLRDILRYGIDLAQAILELHSKEILVLNLKPYNFLLDQNDEAILGDLGIPYLLLQIPLPSSDIARRLGTPNYMAPEQWQPEVRGPLSLETDSWGFGCSIVEMLTGVQPWCGKSVEEVHDSVVRKQEKPFIPSGLPPAVERVIIGCFAYDFRSRPSMKNILEAFKSSENAVYSDGGWTGLGSRTITDNFIVNGYSEWFLSKENFLVGDLVRSRKPPHSCKPENMDVPGGTVVGLERDSDQDGYVLVRVLGIHDPLRVHKYTLERVTSGLAAGDWVRLETEDRRNSRVGILHSISRDGSVDVGFIGMETLWKGSCTNLQMAESYCKGQFVRLKANVLSPRFEWPRKRGGAWATGRIWQVLPNGCLVVNFPGRLPIGDECSSFLADPAEVELVSFNTSPGLVKKYQHLEDFHWAVRPLLIALGLFSAMKFGIFVGKKIGIGRSKEKRGQSTMTQNESQRLDNQTAGNAAWLPQTVAVSSEKVLAQVMAGKFLPKS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0551 750 ProSiteProfiles Protein kinase domain profile. 157 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0551 750 Pfam Protein tyrosine and serine/threonine kinase 157 420 IPR001245 GO:0004672|GO:0006468
Vvi4g0551 750 Gene3D Transferase(Phosphotransferase) domain 1 243 431 - -
Vvi4g0551 750 SUPERFAMILY Protein kinase-like (PK-like) 158 421 IPR011009 -
Vvi4g0551 750 PANTHER OS06G0639500 PROTEIN 113 739 - -
Vvi4g0551 750 Gene3D Phosphorylase Kinase; domain 1 141 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0551 Vvi-Chr4 5078785 5087764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0551 152 422 MAP Kinase Kinase Kinase AT2G17700 25.368 8.91e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vvi4g0551 PK_Tyr_Ser-Thr 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0551 - - vvi:100268069 1281.54