Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0547 ATGGAACTTCAATTGGGTCTGGCACTTCCAGCCTACACTCCTGCAGTGAAGGTGGTGGAGCTGAAAGGTTGTGGAAATGAGGCAAAGCAGAAGCTGGGTTCCCAGCCTTGGAGCTTTGGGTGTGAAAGCTACATGAAAAACAAGCGTGGTTTTGGTGAGGCTTTTGAGAAAATTGAAGATCATGACCATGTGTCAGATGGGACTTCATTGCCTTTGCTATTGTGGCATGGCCAGCCAAATGACGAGGATGATCACAATGGTCTCGGGAAGAGAGCCTCTTGCCCCATTAACAAGAATGGTGAGGAAGGAAATGCAGTTGTTGGGTGGCCACCAGTAAAATCATGGAGAAAGAAGGTGATCTGCCAGCATCAAGGTGGTCGAATGGTGTTTGATCGGACGGCAGAGAAGGAAAGTGGTGGAGCAGGCCCCATCTACGTGAAGGTGAAGATGGAGGGAGTGGCGATAGCGAGGAAGATCAATCTAAAGCTGTATCAGTCGTATCAGATGCTCAAAAACTCCTTGACTGCAATGTTTGCTCGGTGCAAAAAATGTGACGTGGATTGTGTACACTACACTCTTACCTACCAAGACAAGGAGGGTGATTGGCTGCTTGCCGGAGATGTTCCATGGAGAACATTCATCGAGTCTGTGCAGCGCCTGGAGTTAGTAAGGAATGGAGGTTGA 684 0.4868 MELQLGLALPAYTPAVKVVELKGCGNEAKQKLGSQPWSFGCESYMKNKRGFGEAFEKIEDHDHVSDGTSLPLLLWHGQPNDEDDHNGLGKRASCPINKNGEEGNAVVGWPPVKSWRKKVICQHQGGRMVFDRTAEKESGGAGPIYVKVKMEGVAIARKINLKLYQSYQMLKNSLTAMFARCKKCDVDCVHYTLTYQDKEGDWLLAGDVPWRTFIESVQRLELVRNGG* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0547 227 Gene3D - 139 226 - -
Vvi4g0547 227 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 224 IPR003311 GO:0005634|GO:0006355
Vvi4g0547 227 Pfam AUX/IAA family 39 224 IPR033389 -
Vvi4g0547 227 ProSiteProfiles PB1 domain profile. 143 227 IPR000270 GO:0005515
Vvi4g0547 227 SUPERFAMILY CAD & PB1 domains 141 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0547 Vvi-Chr4 5036148 5039288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0547 146 220 B3 DNA Binding Superfamily AT3G61830 34.146 3.72e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi4g0547 AUX_IAA 9.3e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0547 K14484 - vvi:104879021 479.944