Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0541 ATGGCTAGTGTTCAACGTCACGGGAAGGTTGAACCTGGCTTTGAAGGGTCTCAAATGAATTGGATTGATAATGACGGGCATTTTCTTTTATCAAACAACTCAGATTTTGCTTTTGGATTTGAGGCCACGAATGATGTCCAATTGTTTCTACTAGTTGTTATCCACCTTGCTGCTAAGAAAATAATTTGGACTGCAAATAGAGGGTCCCCAGTTCAGAATTCTGATAAGTTTGTATTTGATGACAAGGGAAGGGTGTTCCTCCAAAAGGGGAATAGGACTGTTTGGTCCCCAGATACTGCTGGCAAAGCTGTTTCTGCAATAGAAATGCAGGACTCAGGAAATTTGGTTTTGGTAGGGAATGAGGGTCAACCAATTTGGCAGAGTTTTGATCATCCTACAGACACTCTTTTATCCTACCAGAATTTTAAAGAGGGAATGAAGCTTGAAAGTGATCTTACCAATGATAATATCAGCTATTATCTCGAAATCAAGTCAGGTAATATGATTCTTTATGCAGGTTACCGAACTCCTCAGCCTTATTGGTCTATGAAGAAGGAAAACCTAAAAATTGTAGAAAAAGATGGAGACCCCGTTTCAGCGTCGATTGAAGGCAATTCTTGGAGATTCTATGATAGAAACAAAGCCTTATTGTGGCAATTTGTTCTCTCACAAAATGGTGATACAAATTCCACTTGGGCTGCGACTTTAGGAAGTGATGGCTTTATCTCTTTCACTACTTTATCAGATGGGGGAATTTCGCAAGTACAGAAACAGATACCAGGGGACTCTTGCAGTTCGCCAGGATTTTGTGAAGCCTATTATATTTGTTCCAGTAACAGGTGCCAGTGCCCTTCAGTTCTTAGCTCCAGGCCTAACTGCAACACGGGGATCGTCTCTCCATGCAAAGATTCCACAGAGCTTGTAAATGCTGGGGATGGATTCAACTATTTTGCAATTGAGTTCATCTCACCCTCTCTTCCAGATACCGACTTAAATGGTTGCAAAAACTCTTGCCTCAGTAACTGCTCATGCCTTGCATCGTTCTTTAAAAACAGTACTGGGAATTGCTTTCTGTTTGACAGTGTAGGAGGTTTGCAGAGCACTGATGGACAGGGTTTTGCTATGTATATTAAAGTCTCAAGTAGTGGAGGTAGTGATGTGAACCCTGGTGGGGACGGGGGTGGAGGCAGCAAGAAACACTTCCCATATGTTGTGATCATAGCTGTTTCTACTGTACTTGTAATTATTGGCTTAGTTTATGTGGGATTTAGATACTCAAGGAGGAAGAAGTCGCCTGAATCTCCTCATGATCATACTTCAGAGGAGGATAATTTCTTGGAGAGTTTGTCTGGGATGCCAATCCGTTTCAGTTATAAAGATCTCCAAACTGCAACTGATAATTTCTCTGTGAAGCTTGGGCAAGGAGGATTTGGATCTGTATACCGAGGGGCGCTCCCTGATGGGACGCAATTGGCTGTGAAAAAATTGGAAGGCATTGGTCAGGGAAAGAAGGAGTTTCGAGCTGAAGTTAGCATCATTGGCAGCATCCACCATCTCCACTTGGTCAAGCTAAAAGGCTTTTGTGCTGAAGGAAGTCATCGGCTTCTTGCTTATGAGTTCATGGCCAATGGGTCTCTTGATAGATGGATCTTCAGGAAAAACAGAGAGGGCTTCATGTTGGACTGGAACACAAGATTCAATATTGCATTGGGCACAGCAAAGGGACTGTCTTACCTTCATGAAGATTGTGATGCCAAGATTATTCACTGCGACATAAAACCAGAAAACGTGCTTCTGGACGATAACTACCATGCCAAAGTCTCAGATTTCGGTTTGGCAAAGCTGATGACTCGTGAGCAGAGCCATGTTTTCACCACTCTGAGGGGCACCAGGGGTTACCTTGCACCTGAGTGGATCACAAACTATGCCATATCAGAGAAGAGTGATGTTTATAGCTATGGGATGGTGTTGCTTGAGATCATTGGAGGGAGAAAGAACTATGACCCCTCCGAGATTTCAGAGAAATCCCATTTCCCCACTTATGCCTTTAAGATGATGGAAGAAGGGAAGCTGAGAGATTTACTGGACTCGCGGCTGGAGGTCGATGAAGAAGACGAGAGGGTGTCTACCGCAATTAAAGTTGCAATGTGGTGCATACAGGAAGATATGCATCAGAGGCCATCAATGATGAAAGTAGTCCAAATGCTAGAAGGCCTCTGTGCTGTTCCTCAGCCGCCCACCACTTCCCAAATGGGATCCCGATTTTACTCCGGCTTCTTTAAATCAATCAGCGAAGAGGGGACTTCATCAGGACCATCAGACTGCAATAGTGATGCATACCTCTCTGCCGTGAGGCTTTCAGGACCAAGATAA 2373 0.4378 MASVQRHGKVEPGFEGSQMNWIDNDGHFLLSNNSDFAFGFEATNDVQLFLLVVIHLAAKKIIWTANRGSPVQNSDKFVFDDKGRVFLQKGNRTVWSPDTAGKAVSAIEMQDSGNLVLVGNEGQPIWQSFDHPTDTLLSYQNFKEGMKLESDLTNDNISYYLEIKSGNMILYAGYRTPQPYWSMKKENLKIVEKDGDPVSASIEGNSWRFYDRNKALLWQFVLSQNGDTNSTWAATLGSDGFISFTTLSDGGISQVQKQIPGDSCSSPGFCEAYYICSSNRCQCPSVLSSRPNCNTGIVSPCKDSTELVNAGDGFNYFAIEFISPSLPDTDLNGCKNSCLSNCSCLASFFKNSTGNCFLFDSVGGLQSTDGQGFAMYIKVSSSGGSDVNPGGDGGGGSKKHFPYVVIIAVSTVLVIIGLVYVGFRYSRRKKSPESPHDHTSEEDNFLESLSGMPIRFSYKDLQTATDNFSVKLGQGGFGSVYRGALPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVKLKGFCAEGSHRLLAYEFMANGSLDRWIFRKNREGFMLDWNTRFNIALGTAKGLSYLHEDCDAKIIHCDIKPENVLLDDNYHAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSEISEKSHFPTYAFKMMEEGKLRDLLDSRLEVDEEDERVSTAIKVAMWCIQEDMHQRPSMMKVVQMLEGLCAVPQPPTTSQMGSRFYSGFFKSISEEGTSSGPSDCNSDAYLSAVRLSGPR* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0541 790 ProSitePatterns Protein kinases ATP-binding region signature. 472 495 IPR017441 GO:0005524
Vvi4g0541 790 Gene3D Phosphorylase Kinase; domain 1 429 540 - -
Vvi4g0541 790 CDD PAN_AP_plant 325 380 - -
Vvi4g0541 790 CDD B_lectin 22 132 IPR001480 -
Vvi4g0541 790 ProSiteProfiles Protein kinase domain profile. 466 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0541 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Vvi4g0541 790 FunFam Serine/threonine-protein kinase 16 130 - -
Vvi4g0541 790 ProSiteProfiles Bulb-type lectin domain profile. 14 130 IPR001480 -
Vvi4g0541 790 Gene3D Transferase(Phosphotransferase) domain 1 541 748 - -
Vvi4g0541 790 Pfam Protein kinase domain 470 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0541 790 SUPERFAMILY Protein kinase-like (PK-like) 447 737 IPR011009 -
Vvi4g0541 790 SMART blect_4 20 132 IPR001480 -
Vvi4g0541 790 FunFam S-receptor-like kinase 5 541 745 - -
Vvi4g0541 790 FunFam serine/threonine-protein kinase PBS1-like 434 540 - -
Vvi4g0541 790 PIRSF SRK 5 786 IPR024171 GO:0004674
Vvi4g0541 790 CDD STKc_IRAK 472 739 - -
Vvi4g0541 790 Gene3D - 20 131 IPR036426 -
Vvi4g0541 790 SMART serkin_6 466 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0541 790 Pfam D-mannose binding lectin 61 143 IPR001480 -
Vvi4g0541 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 21 747 - -
Vvi4g0541 790 ProSiteProfiles PAN/Apple domain profile. 301 380 IPR003609 -
Vvi4g0541 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 184 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0541 Vvi-Chr4 4952205 4954577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0541 399 746 Receptor kinase-like Gene Family AT5G20050 42.935 1.32e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi4g0541 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0541 - - vvi:100242272 1582