Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0540 ATGGCTTCCTATGGCTTTGACCACTCTCTCCTTTGCCCACTCTCCCCATTCTCCTGCTCCGGCAAATTCAAATTTCCCGCCAAAACTCCACTCTCAACTGTCGAATTTTGTGCCAAAGCCTCCAAGTCTTCCTCCGTCGCCACCACCGCCATCGAAGATTCGAATCAACCCTGCTTTGATGTTTCATATGGACGAAGGGAACTTATACTCATAGCCACACTACCATTTCTTCTTCCCGTGCACGAGTCTATGCAGAAATTTGGTGTAAAGGCTGCAGAGTTAGGTACTACTGAATATCTGCTAATGAAAGAGGAGGTAAGGAAGGTTTTGTCGAAGGGCAAGGCTGCTGGTGTACTTCGCCTTGTTTTTCATGATGCTGGGACCTTTGAAATGGATGATAATTCAGGTGGCATGAATGGTTCCATTGTGTATGAACTTGATAGACCAGAAAACACAGGTCTAAAAAAATCTTTGAAGATTCTAGAGAAAGCGAAGAGTGGAGTGGATATGGTACAACCAGTATCATGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGCGGTGGTCCAAAAATCCCAGTTCAGTTAGGCAGATTAGACTCAATGGCACCTGATCCTGAAGGGAAACTTCCTGAAGAATCTTTGGATGCTTCTGCCTTGAAGCAATGCTTTCAAAGAAAAGGCTTAGCAACACAAGAACTTGTTGCATTATCTGGAGCTCATACTCTTGGAGGTAAAGGTTTTGGAAATCCCACTGTTTTTGACAACTCATATTTCAAGATACTTCTGGAGAAGCCATGGAAGTCTTCAGGGGAAGCAAGATAG 837 0.4456 MASYGFDHSLLCPLSPFSCSGKFKFPAKTPLSTVEFCAKASKSSSVATTAIEDSNQPCFDVSYGRRELILIATLPFLLPVHESMQKFGVKAAELGTTEYLLMKEEVRKVLSKGKAAGVLRLVFHDAGTFEMDDNSGGMNGSIVYELDRPENTGLKKSLKILEKAKSGVDMVQPVSWADMIAVAGAEAVSVCGGPKIPVQLGRLDSMAPDPEGKLPEESLDASALKQCFQRKGLATQELVALSGAHTLGGKGFGNPTVFDNSYFKILLEKPWKSSGEAR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0540 278 ProSitePatterns Peroxidases proximal heme-ligand signature. 237 247 IPR019793 -
Vvi4g0540 278 ProSiteProfiles Plant heme peroxidase family profile. 115 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 Pfam Peroxidase 103 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 CDD plant_peroxidase_like 115 271 - -
Vvi4g0540 278 Gene3D - 80 219 - -
Vvi4g0540 278 PRINTS Haem peroxidase superfamily signature 115 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Haem peroxidase superfamily signature 192 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Haem peroxidase superfamily signature 174 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 Gene3D Peroxidase, domain 2 220 276 - -
Vvi4g0540 278 FunFam L-ascorbate peroxidase 105 222 - -
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 173 191 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 133 143 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 213 230 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 231 252 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 115 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PRINTS Plant ascorbate peroxidase signature 192 204 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 ProSitePatterns Peroxidases active site signature. 115 126 IPR019794 GO:0004601
Vvi4g0540 278 SUPERFAMILY Heme-dependent peroxidases 112 272 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi4g0540 278 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 98 268 IPR044831 GO:0004601|GO:0034599
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0540 Vvi-Chr4 4943560 4950476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0540 102 269 Peroxidase AT1G14540 29.596 1.97e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0540 K00434 - vvi:100247405 535.028