Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0536 ATGGTACTGTGCAGGCCTGAGGTTATTGGTTCCAAACTCTATGCAACAGTGGATCTTGAAAAGGCGAGGGTGGCGCGGACCAGGCTGATAGAAAATCGAGCATATTCCAAGCCCCGGTGGTTCGAGTCCTTTCGAATATACTGTGCCCACCGGATTTCCAACATCATATTCACAATCAAAGAAGATAATCCTGTTGGAGCAAGACTGATTGGAAGAGCCTATGTTCCTGTTGAGGCAATCAAATCCGGGCATGAAGTGGATCTGCAGGTGGAGATATTGGATGAAGACAGAAATCCTTTACCAGGCCATTCTAGAATCCATGTGAAGTTGCACTTTTTCCATGCCAAGAAACAGAGCGATTGGTCAAAAGGAATTCTCAATCCTGAGTTGGGGGAAGTCCCGTGCACATTCTTCATGCAGAGGCAGGGTTGCAAAGTTTCACTCTACCAAGATGCTCATGTCCCCCATGGCGGTAAGCCTCAATTCCCTCTTTCCGGAGGAAGGTTTCATGAATACCACAGGTGCTGGGAGGACATTTTTTATGCTATATACCGTGCCCAACACTTGATATACATAACTGGATGGTCTGTGTATACTAAGATCACCTTGGTAAGGGACTCAATGGAGCCAAAGCCAGCTCAAATTATGATGACACTTGGGGAATTGCTCAAACTGAAGGCGGATCAAGGTGTGAGAGTCCTTATGCTTATTTGGGACGACAGAACTTCAGTTGAGGCGCTAAAGAAGGATGGCTTGATGGAAACCCATGATCAAGAAACTGCGGATTACTTCCGGGACACAAAGGTGCGTTGTGTTCTGTGCCCCCGTTATTCTGACAGGGGACGAAGTACAGTTCAGGGATTTGAAACTTCTACTATGTTTACTCATCATCAGAAAACAGTTGTGGTAGACAGCGAAATGGCTGATATAGGGTACGAGAAGAGGAGGATTGTGAGTTTTGTTGGTGGCATTGATCTTTGTGGTGGGCGATATGACACACAAGAACATCCCCTGTTCAGGACTTTGGGCACAATCCATCATGATGATTTCCATCAGCCCAATTTCCCGGGAGCTTCCATCACCAAAGGTGGACCAAGGGAGCCCTGGCATGATATTCATTGCAGGCTAGAAGGCGCTGTTGCTTGGGATGTCTTGTATAACTTTGAGCAGAGGTGGAGGAAGCAAGTCGGAGAAGATGGTCTTTTTCCACTGAGCAAGCTTGAACAAATCACAGTCCGCCCATCCCCAGTTACCACACTGGAAGACCCTGAAACATGGAATGTTCAGCTATTCAGATCCATTGATGGCGGGGCTGCTGCTTTTCCCTTCCCTGAAAAGCCCCGAGAGGCAGCAGATCGTGGCCTTATTACTGCAAAGAATAGTCTCATCGACAGAAGCATTCAGGATGCTTATATCAACGCCATTCGACGGGCAAGGCATTTCATTTACATAGAGAATCAGTATTTCATTGGAAGCTCCTTTGACTGGGCTGCAAAAGACATCAAGGTTGAAGATATAAATGCATTGAATCTCATACCCAAGGAGCTCTCACTAAAGATTGTCAGCAAGATTGAGGCAGGGGAGAGGTTCACTGTTTACATTGTAATCCCACTGTGGCCAGAAGGCATACCCGAGAGCGCTTCCGTTCAGGCAATATTAGATTGGCAGAGGAGAACAATGGAAATGATGTATACTGATATTGTCCAAGCTCTTCAAGCCAGGGGAATCCACGCAAACCCGAGGGACTATTTAACATTCTTCTGCCTTGGCAACCGTGAGCTGATCAATGCCGATGAATATAAGCCTAAAGAGAAACCAGCAGAGGGTAGTGATTACATGAGAGCTCAGCAGTCTCGGCGTTTCATGATCTATGTTCATTCAAAGATGATGATAGTGGACGATGAGTACATAATCATTGGGTCGGCCAACATCAACCAGAGGTCAATGGATGGTGGGAGAGACACAGAGATAGCCATGGGAGGGTACCAGCCACATCATTTAGCAGCAACCGAGGAGGGGGGGAGGGGTGCGATCCATGGTTTTCGATTGGCGTTATGGTATGAGCACCTTGGTGGGCACGATGCCTCCTTCCTCCATCCAGAAAGCGTGGAATGTGTGAGAGTAGTAAACGAGTCTGCTGAGAGGAACTGGAGAGCGTATTCAAGTGACACGCTGGTGGCAGATCTTCCAGGGCATTTGCTCAGTTACCCAGTCCAAGTCAACCAGAATGGCACCGTCACTGCGCTGCCGGAGACTGAGTTCTTTCCTGACACCAAGGCTCGTGTCCTTGGCACCGTATCTGAGTTCCTTCCACCCATCCTTACCACCTAG 2331 0.4783 MVLCRPEVIGSKLYATVDLEKARVARTRLIENRAYSKPRWFESFRIYCAHRISNIIFTIKEDNPVGARLIGRAYVPVEAIKSGHEVDLQVEILDEDRNPLPGHSRIHVKLHFFHAKKQSDWSKGILNPELGEVPCTFFMQRQGCKVSLYQDAHVPHGGKPQFPLSGGRFHEYHRCWEDIFYAIYRAQHLIYITGWSVYTKITLVRDSMEPKPAQIMMTLGELLKLKADQGVRVLMLIWDDRTSVEALKKDGLMETHDQETADYFRDTKVRCVLCPRYSDRGRSTVQGFETSTMFTHHQKTVVVDSEMADIGYEKRRIVSFVGGIDLCGGRYDTQEHPLFRTLGTIHHDDFHQPNFPGASITKGGPREPWHDIHCRLEGAVAWDVLYNFEQRWRKQVGEDGLFPLSKLEQITVRPSPVTTLEDPETWNVQLFRSIDGGAAAFPFPEKPREAADRGLITAKNSLIDRSIQDAYINAIRRARHFIYIENQYFIGSSFDWAAKDIKVEDINALNLIPKELSLKIVSKIEAGERFTVYIVIPLWPEGIPESASVQAILDWQRRTMEMMYTDIVQALQARGIHANPRDYLTFFCLGNRELINADEYKPKEKPAEGSDYMRAQQSRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGGYQPHHLAATEEGGRGAIHGFRLALWYEHLGGHDASFLHPESVECVRVVNESAERNWRAYSSDTLVADLPGHLLSYPVQVNQNGTVTALPETEFFPDTKARVLGTVSEFLPPILTT* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0536 776 SUPERFAMILY Phospholipase D/nuclease 465 705 - -
Vvi4g0536 776 Gene3D C2 domain 9 126 IPR035892 -
Vvi4g0536 776 Gene3D Endonuclease Chain A 166 415 - -
Vvi4g0536 776 FunFam Phospholipase D delta 166 411 - -
Vvi4g0536 776 Pfam Phospholipase D C terminal 695 765 IPR024632 -
Vvi4g0536 776 Pfam C2 domain 11 88 IPR000008 -
Vvi4g0536 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 113 IPR035892 -
Vvi4g0536 776 Gene3D Endonuclease Chain A 436 670 - -
Vvi4g0536 776 CDD C2_plant_PLD 4 113 - -
Vvi4g0536 776 PIRSF PLD_plant 2 776 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi4g0536 776 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 292 330 IPR001736 GO:0003824
Vvi4g0536 776 ProSiteProfiles C2 domain profile. 1 90 IPR000008 -
Vvi4g0536 776 FunFam Phospholipase D 433 667 - -
Vvi4g0536 776 SMART pld_4 292 330 IPR001736 GO:0003824
Vvi4g0536 776 SMART pld_4 621 648 IPR001736 GO:0003824
Vvi4g0536 776 Pfam Phospholipase D Active site motif 622 648 IPR001736 GO:0003824
Vvi4g0536 776 Pfam Phospholipase D Active site motif 292 330 IPR001736 GO:0003824
Vvi4g0536 776 SUPERFAMILY Phospholipase D/nuclease 116 402 - -
Vvi4g0536 776 PANTHER PHOSPHOLIPASE D 9 764 IPR015679 -
Vvi4g0536 776 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 621 648 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0536 Vvi-Chr4 4894521 4897030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0536 11 776 Phospholipase D Gene Family (Wang group) AT3G15730 67.145 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0536 K01115 - vvi:100257647 1597.02