Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0535 ATGGTGTCTGCTACTAAGAAGTTCAGGGGTGTCAGGCAGCGTCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCTTTACTGAAGAGGAGGGTGTGGCTAGGGACATTCGAGAGCGCTGAGGCAGCCGCGAGAGCATATGATCAGGCCGCCATACTGATGAATGGACAGAACGCAAAGACCAATTTTCCGGTTGTGAAGAATGATCAAGGAGAAGTTAAGAGTAGTGCTGGTACTGATCATGAAGATGAATCCCCATTATCGCGCAAGGCGCTGTCTGAAATCCTTACCACCAAGCTGAGGAAGTGCTGCAAGGACCCTTCTCCTTCCCTCACTTGCTTGAGGCTCGACACTGATAATTCTCATCTGGGGGTATGGCAGAAGCGCGCTGGGACACGCTCAGGGTCCAGCTGGGTGATGAGAGTTGAGCTTGGGAAGAAGGATGGTCAAGTTTCTGATGAAAATTCTTCGTCCTTTTTACGGTCACCGAGGGGCGGAGCTGAAGCCGGGGATGGTGTGGATGGAGAAGAAGATAGGATGGCAATGCAAATGATAGAAGAGCTTCTCAACTGGAATTGTCCTTGA 585 0.5145 MVSATKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFESAEAAARAYDQAAILMNGQNAKTNFPVVKNDQGEVKSSAGTDHEDESPLSRKALSEILTTKLRKCCKDPSPSLTCLRLDTDNSHLGVWQKRAGTRSGSSWVMRVELGKKDGQVSDENSSSFLRSPRGGAEAGDGVDGEEDRMAMQMIEELLNWNCP* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0535 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 149 - -
Vvi4g0535 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vvi4g0535 194 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vvi4g0535 194 MobiDBLite consensus disorder prediction 147 176 - -
Vvi4g0535 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vvi4g0535 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vvi4g0535 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vvi4g0535 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vvi4g0535 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vvi4g0535 194 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Vvi4g0535 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0535 Vvi-Chr4 4891574 4892251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0535 5 194 AP2-EREBP Transcription Factor Family AT5G25390 59.896 4.67e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi4g0535 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0535 - - vvi:100259484 382.874