Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0524 ATGGGAGAAACAAGGGACAACGATGCTTACGAGGAAGAGCTTCTCGACTACGAGGAAGAAGAAGACAAAGCCCCCGACTCCGTCACCGGAAAAGTCAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGGGCAATTGTGGACTCGGGGTTTGAGCATCCTTCTGAAGTGCAACATGAGTGTATCCCTCAAGCTATCTTGGGCATGGATGTTATTTGTCAAGCTAAATCGGGGATGGGAAAAACTGCTGTGTTTGTTCTGTCAACCCTGCAACAAATTGAGCCTGTCACAGGTCAAGTCGCAGCTCTCGTTCTATGCCATACAAGGGAGTTAGCTTACCAGATCTGCCACGAGTTCGAGAGATTCAGTACTTATTTACCTGATATCAAGGTTGCTGTTTTCTATGGTGGCGTCAATATAAAAATTCACAAGGATCTTTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCACTTGCTAGAGACAAGGACCTTGCTTTAAAGAATGTGAGACACTTTATCCTTGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGGAGGGATGTTCAAGAGATCTTCAAGATGACTCCTCATGATAAGCAGGTTATGATGTTTTCAGCAACCCTCAGCAAGGAAATCCGCCCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGTCTTGTACAGCACTACATCAAACTGAGTGAGCTTGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTCAATCAAGTTGTTATCTTCGTCAAAAGTGTGAGTAGAGCCGCAGAGCTGAACAAGTTACTTGTGGAGTGCAATTTCCCGTCTATCTGCATCCATTCTGGGATGCCCCAGGAAGAAAGGTTGACACGCTACAAGGGTTTCAAGGAGGGGCATAAAAGGATTCTTGTGGCCACGGATTTGGTTGGTAGGGGAATTGACATTGAGCGTGTCAATATTGTTATAAACTATGACATGCCAGATTCTGCAGACACTTATCTGCACAGGGTTGGTAGAGCTGGAAGATTTGGCACCAAAGGACTTGCAATTACATTTGTTTCATCAGCTTCTGACTCTGATGTTCTTAATCAGGTCCAGGAGAGATTTGAGGTGGATATTAAGGAGCTCCCTGAGCAGATTGATACCTCTACATACATGCCATCGTAA 1287 0.4413 MGETRDNDAYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0524 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 401 IPR027417 -
Vvi4g0524 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 424 IPR001650 -
Vvi4g0524 428 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Vvi4g0524 428 CDD SF2_C_DEAD 264 393 - -
Vvi4g0524 428 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 406 - -
Vvi4g0524 428 Pfam Helicase conserved C-terminal domain 277 384 IPR001650 -
Vvi4g0524 428 Gene3D - 260 427 IPR027417 -
Vvi4g0524 428 Gene3D - 43 259 IPR027417 -
Vvi4g0524 428 Pfam DEAD/DEAH box helicase 72 237 IPR011545 GO:0003676|GO:0005524
Vvi4g0524 428 CDD DEADc_DDX39 46 253 - -
Vvi4g0524 428 FunFam DEAD-box ATP-dependent RNA helicase 260 428 - -
Vvi4g0524 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 251 IPR014001 -
Vvi4g0524 428 FunFam DEAD-box ATP-dependent RNA helicase 56-like 35 253 - -
Vvi4g0524 428 SMART helicmild6 303 384 IPR001650 -
Vvi4g0524 428 SMART ultradead3 66 267 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0524 Vvi-Chr4 4804236 4813742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0524 1 428 Eukaryotic Initiation Factors Gene Family AT5G11200 85.928 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0524 K12812 - vvi:100250852 840.491