LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g0522	ATGTTTATGCTTCTGGTTGTCTGTGGCTTTCTGAACCAAGCTGCTTTTAGTTTAGCAGAACCCATCTCCTTCTCGTTCTCCTCTTTTGATCCAGGAAATTGTGGCACTGGCAGTAAACTGATCTGCATGGGCTCAGTGACAGCAGGTGAAGGGTATTTGAACATCACTCCACAACCCCCACATGAGAATGAAACTTCACCAACTTCATCAACAAACATGGTTGGGAGGGTTTTATATCGTCACCCTGTGCAAGCATGGCCGGCACTTATCACTACCACCTTCACAGTTAGGATCTCCCCCTTCCCCAATTCAACTGGGTCTGGCGATGGAATGGCCTTTATCATGGCACAGGATAGCCAACCCTCCCCAGCTGGTAGCTTTGGCTCGTTTCTTGGAATCCTGGACAGGTCAACTGAAGGTGGGGTTGTTCGTCAGCTAGCTGTGGAGCTAGACACCTATATGAATGAGTTTGACCCAGATGCTAACCATATTGGGATTGATACAACAAGCATAGCGATTCCAATTGCAGCAAAGAGCCTAAGTGGCACTGGGGTCGATCTTAAAAGTGGAAGAGAAGTCAAGGTTAAGATTGATTATGATGGATGGAGAGAGACCCTTCACATTTCTGTTGGGTATGCAGGGAATCCTCTTCTGAGCTTTCTCAACCATTCCATAGCCTTGTCAGATACGGTTCCAAGCTCTGTCTATGTGGGCTTTACAGGCTCCACTGGGACTGTTTCAGAGACCCATCAGGTCCTTGACTGGGCATTCACATCAATACCGATAACATGTAGCTCTTCCAAGTGCAGTGGAAATGATAAAACAAAAACCATATTGATCATTGTTTTTCCAGTCACCGTGGCTATGTTGGTTTTGGTGATGTGTGGGATTCTTTCAGTCCTGAGAGTTGTCAAGAGGAGAAATGGGAGGATTGACAGAGAAGATTTCGAAAGCCGCTCAAGGTCTGCTGCAAATGTCCCTAAAATGTTTACTTATAAACAGCTCTCAAAGGCTACCCACAACTTCAGCAAAGAAAACCTGTTGGGGGCTGGTGGATTTGGAACTGTTTACAAAGGCATTTTGTCTGATCATCCTTCCCCTATAGCAGTCAAGAAGATTTCAGCAACCTCAAAGCAAGGCGAGAGGGAGTATTTGGCAGAAATATGCACTATAGGCCGCCTGAGGCACAAAAACATAGTACAACTCCAGGGATGGTGCCATGAGGGCAAGCATCTCCTCCTAGTATATGAATATATGTCGAATGGCAGCCTTGATCGCTTCATTGGCCGGTGTTTTCTTGACTGGAAAACCAGGTTCAAAATATTAACAGGGTTGGCATCTGCATTACTCTACCTCCATGAAGAGTGTGGCAACCCTGTGGTTCACAGAGACGTCAAGCCCAACAACATCATGTTGGATTCTGATTACAATGCTCAATTGGGTGACTTTGGGCTTGCAAGATTGCTCCAAAACGACGCCTCGGTTACAACTATGCTTGCAGGGACTCCAGGATACTTGGCTCCTGAGGTGGGCTTCACTGGAAAGGCGACACCAGATTCTGATGTCTATAGCTTTGGCATGGTGGTACTGGAAGTGGTTTGTGGAAGGAGATCAAGAGGAATTACAGAGGAGACTAGCTTGGTGGATTATGTATGGATTTTGCATGGAAAGGATGCATTGCTCCAATGTGTGGACAGCATGCTCAAAGGCGAGTTCGATGAGGAGCAAGTGAAGAGGACTCTAGTGGTAGGCCTTGCTTGTCTGCATCCAGATTTTATGCTCAGGCCTAGGATGAGGAAGGTGATTCAAATCCTTCTCAATCCAAATGAACCTCTAATGGATTTGCCAGAAGCTCGACCCAGTGGAATCTTTGTACCAGTACCCTCTTCTGCTGCAACCGTTACTGATTTCGGCTCCTTTGCTGCCTCTGCTTCATACTCAAATGGGAAGATGGCAGATGAGACAGAAGTCCAATACGGCCTGTGA	1986	0.4658	MFMLLVVCGFLNQAAFSLAEPISFSFSSFDPGNCGTGSKLICMGSVTAGEGYLNITPQPPHENETSPTSSTNMVGRVLYRHPVQAWPALITTTFTVRISPFPNSTGSGDGMAFIMAQDSQPSPAGSFGSFLGILDRSTEGGVVRQLAVELDTYMNEFDPDANHIGIDTTSIAIPIAAKSLSGTGVDLKSGREVKVKIDYDGWRETLHISVGYAGNPLLSFLNHSIALSDTVPSSVYVGFTGSTGTVSETHQVLDWAFTSIPITCSSSKCSGNDKTKTILIIVFPVTVAMLVLVMCGILSVLRVVKRRNGRIDREDFESRSRSAANVPKMFTYKQLSKATHNFSKENLLGAGGFGTVYKGILSDHPSPIAVKKISATSKQGEREYLAEICTIGRLRHKNIVQLQGWCHEGKHLLLVYEYMSNGSLDRFIGRCFLDWKTRFKILTGLASALLYLHEECGNPVVHRDVKPNNIMLDSDYNAQLGDFGLARLLQNDASVTTMLAGTPGYLAPEVGFTGKATPDSDVYSFGMVVLEVVCGRRSRGITEETSLVDYVWILHGKDALLQCVDSMLKGEFDEEQVKRTLVVGLACLHPDFMLRPRMRKVIQILLNPNEPLMDLPEARPSGIFVPVPSSAATVTDFGSFAASASYSNGKMADETEVQYGL*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g0522	661	Gene3D	-	20	277	-	-
	Vvi4g0522	661	Pfam	Protein kinase domain	343	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0522	661	Gene3D	Phosphorylase Kinase; domain 1	327	418	-	-
	Vvi4g0522	661	Pfam	Legume lectin domain	22	260	IPR001220	GO:0030246
	Vvi4g0522	661	FunFam	probable L-type lectin-domain containing receptor kinase S.5	327	418	-	-
	Vvi4g0522	661	Gene3D	Transferase(Phosphotransferase) domain 1	419	612	-	-
	Vvi4g0522	661	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	259	IPR013320	-
	Vvi4g0522	661	FunFam	probable L-type lectin-domain containing receptor kinase S.5	419	613	-	-
	Vvi4g0522	661	PANTHER	-	63	607	-	-
	Vvi4g0522	661	ProSitePatterns	Protein kinases ATP-binding region signature.	348	372	IPR017441	GO:0005524
	Vvi4g0522	661	CDD	lectin_legume_LecRK_Arcelin_ConA	22	259	IPR001220	GO:0030246
	Vvi4g0522	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Vvi4g0522	661	SMART	serkin_6	342	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0522	661	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	20	275	-	-
	Vvi4g0522	661	CDD	STKc_IRAK	348	605	-	-
	Vvi4g0522	661	ProSiteProfiles	Protein kinase domain profile.	342	592	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0522	661	ProSitePatterns	Legume lectins beta-chain signature.	146	152	IPR019825	-
	Vvi4g0522	661	SUPERFAMILY	Protein kinase-like (PK-like)	326	621	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g0522	Vvi-Chr4	4797333	4800003	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g0522	5	624	Receptor kinase-like Gene Family	AT5G55830	36.701	5.57e-122	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi4g0522		Pkinase	2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g0522	-		-	vvi:100245599	1327