LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g0521	ATGGGCATTATGTTTCCTGGAATAAAAAAAATTCTGGTGGCCTTTATGATCTTTACACTTCTTGCTTGCATAGGCCACTGTTTTCATGTATCTTCCTTGCCATGCAATGTATCTCTAGCCCAATCTTGTCCTGCTTCACTGTACTATGTTCCAAATTCCCCCAAAACCCTAGCAGCAGCAGCTTCTTTATTCCATGTGGATTCAAATTTAGTCAGACAGACCGTCGAGGGTTACCTGGTTAATGTGAATTGCAGCTGCCCAGCAGGCCACACTGCATTCACCTGGCACATGGATTACACAGTCCAACCTGGTGATACATGGGAGCGAATTTCATCAAGTTTTGGGTCATTTGTGGTGAAGAAAACTGATAAAATGTTGATTTCCTCACAGAATGTTACTTTAGATCTCTTGTGTGGTTGTTCCAAGGATAATAAGGTGATTGTAACCTATAGAGTTAAACATGGGGATACGCTTTATACCATTTGTTCTCGGTTTAGTGCAGATTTAAACCAGACGGTGCAGTTGAATGGGATTGATAATTCAGGTCTTATCCATGATGGAGATGTAATTTTCATTCCAGAACCAGGTAGGAGAGATGACTGTCCCTTTTTTGTTACTTTAAGGTTTTTAGATTCATTATTTATTATAAAAATATTTCTTCAACCACTAATTATTTCTTGGATGTTTTTTCATGGACGTTTCTCAATAGGAGGCCTTGAAAATCTTCTCATGAATAAAAATAAAGTTTCAAAGGTCAAGAAAACTCCAAAACCTCGAATCAGTATGATAGTTGGAATCACTTTGGCTGCTGTTTCTGTTGTGACATTGTTAGTCATGAGTTTTGTGTGGAGTTACTGCTATAAGAGGAGCCGAATTCGACAAGCAAAAGCTTATTCAAGGAGAACTGAATGCTTGCATTGTTATCTTACCACATGCTCTTTCCATAAAAAATCTGAAGAAAGCATGGCTTCATCATTCAATTTAGATAAAGCCACTGTCTTCTCCTACATTGAAGTTTGTGATGCAACTTGCAACTTCAGTATGTCTTTAAAGATTGGCCAAGGATCTTATGGGTCTGTTTACCTTGGAAAATTAAGAGGAATTGATGTGGCCATCAAGCAAATGAAAGAGACAAAGTCAAAAGAGTTCTTCTCTGAGCTCCATATTCTTTCAAGAGTTCACCATACCAACTTGATTAAGCTTATTGGATATGCGGGTGGTGGCGACTCTCTGTTTCTAGTATATGAATTTGCCCAAAATGGAGCATTGAGCCATCATTTGCATAGACCCACTGCAAGAGGTTATAAACCTCTTGAATGGACCACACGACTTCAGATTGCTCTTGATGCAGCAAGAGGCCTTGAGTATATACATGAGCACACAAAACCATATTATGTTCATCGAGATGTGAAAACAAGCAATATTCTCTTAGATTCCAATTTTCGGGCAAAGATCGCAGATTTTGGACTAGTGAAACTATTTGAACATTCTCCAAACTCAGCAGCTGCAGCATCTAGAATTGTGGGCACATTTGGTTATCTTGCTCCTGAGTACATTCGTGACGGGTGTGTGACCACAAAGAGTGATGTCTATGCTTATGGAGTTGTTCTTATGGAACTACTTACTGGCCAACCAGCACTTAGTAGAGATGCAAATCCTGGAAACGATCAGTACATCGAACATCGCTCTCTGGTGGAATATGTAAGTCCACATCAGATTCCAATGTTCTGTCGAATTGCTACAAGATATTGA	1752	0.3927	MGIMFPGIKKILVAFMIFTLLACIGHCFHVSSLPCNVSLAQSCPASLYYVPNSPKTLAAAASLFHVDSNLVRQTVEGYLVNVNCSCPAGHTAFTWHMDYTVQPGDTWERISSSFGSFVVKKTDKMLISSQNVTLDLLCGCSKDNKVIVTYRVKHGDTLYTICSRFSADLNQTVQLNGIDNSGLIHDGDVIFIPEPGRRDDCPFFVTLRFLDSLFIIKIFLQPLIISWMFFHGRFSIGGLENLLMNKNKVSKVKKTPKPRISMIVGITLAAVSVVTLLVMSFVWSYCYKRSRIRQAKAYSRRTECLHCYLTTCSFHKKSEESMASSFNLDKATVFSYIEVCDATCNFSMSLKIGQGSYGSVYLGKLRGIDVAIKQMKETKSKEFFSELHILSRVHHTNLIKLIGYAGGGDSLFLVYEFAQNGALSHHLHRPTARGYKPLEWTTRLQIALDAARGLEYIHEHTKPYYVHRDVKTSNILLDSNFRAKIADFGLVKLFEHSPNSAAAASRIVGTFGYLAPEYIRDGCVTTKSDVYAYGVVLMELLTGQPALSRDANPGNDQYIEHRSLVEYVSPHQIPMFCRIATRY*	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g0521	583	ProSitePatterns	Protein kinases ATP-binding region signature.	352	373	IPR017441	GO:0005524
	Vvi4g0521	583	FunFam	PTI1-like tyrosine-protein kinase 3	418	571	-	-
	Vvi4g0521	583	Pfam	Protein kinase domain	350	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0521	583	SMART	LysM_2	149	193	IPR018392	-
	Vvi4g0521	583	ProSiteProfiles	LysM domain profile.	148	192	IPR018392	-
	Vvi4g0521	583	SUPERFAMILY	LysM domain	148	193	IPR036779	-
	Vvi4g0521	583	Gene3D	Phosphorylase Kinase; domain 1	315	417	-	-
	Vvi4g0521	583	Gene3D	Transferase(Phosphotransferase) domain 1	418	581	-	-
	Vvi4g0521	583	Pfam	LysM domain	150	193	IPR018392	-
	Vvi4g0521	583	Pfam	LysM domain	99	121	IPR018392	-
	Vvi4g0521	583	Gene3D	LysM domain	147	200	IPR036779	-
	Vvi4g0521	583	SMART	serkin_6	346	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi4g0521	583	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	15	566	IPR044812	GO:0019199\|GO:0045087
	Vvi4g0521	583	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Vvi4g0521	583	SUPERFAMILY	Protein kinase-like (PK-like)	323	559	IPR011009	-
	Vvi4g0521	583	CDD	LysM	148	192	IPR018392	-
	Vvi4g0521	583	ProSiteProfiles	Protein kinase domain profile.	346	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi4g0521	Vvi-Chr4	4793095	4796263	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g0521	326	549	Receptor kinase-like Gene Family	AT1G51940	57.143	1.50e-84	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Vvi4g0521		Pkinase	1.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g0521	-		-	vri:117913564	1004.59