Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0514 ATGAGGCTCATCATGGCAATTATCTTGCTAACCTTCTGCAAACAAGTAACCCTAATCCTTGGGGATATCGGGACAGCCACCTCTTACAAACCACCCTACACACCAACTAGGTGCTATGGCAGTAGACAAGATCAATTCCCTCCCGGAAATCTGTTCATTGCTGTGAGTGAAGGGCTGTGGGACAACGGAGCTGCCTGTGGGAGGAGGTACAGGCTGAGGTGTTTGAGTGGCAATAATAGGCCATGCAAAGATGGTACAATTGATGTAAAGGTGGTGGATTACTGCACAAAATCACCCTGCCCTTCTACTATCCTCATGTCAAATGATGCTTTTTCCGCTCTCTCCCGCTCTCCCGATGCTAAAATCAACATCGAATACATCCAGATTTGA 390 0.4718 MRLIMAIILLTFCKQVTLILGDIGTATSYKPPYTPTRCYGSRQDQFPPGNLFIAVSEGLWDNGAACGRRYRLRCLSGNNRPCKDGTIDVKVVDYCTKSPCPSTILMSNDAFSALSRSPDAKINIEYIQI* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0514 129 CDD DPBB_EG45-like 22 126 - -
Vvi4g0514 129 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 129 IPR007112 -
Vvi4g0514 129 Pfam Lytic transglycolase 54 126 IPR009009 -
Vvi4g0514 129 SUPERFAMILY Barwin-like endoglucanases 10 126 IPR036908 -
Vvi4g0514 129 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 128 - -
Vvi4g0514 129 Gene3D - 22 129 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0514 Vvi-Chr4 4758775 4759346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0514 1 120 Expansin Gene Family AT2G45110 30.827 2.55e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0514 - - vvi:104879019 270.396