Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0509 ATGGCGTTGGCTTCGTGGAATCTCACTTCACTGGCGTTCAAGGGTTTATTGTCAGCATCTCACGACCAACGCCTCTTCTCGGCGGCTCAACCCACATCCAATCTAATTCTGCCTCATCACTGTTTATCTCGCTCTGTGCTCGCTTTCTCACGCCGTCGAAAATCCAACTCTCCAGTCCAGTCTTCGAAGAAAAACAAGAAAAGTTCGGCTCATAATAATGCTGAGGAGGATGCTGATTTAGATGAAGATGCTTTTGAGGCACTGTTTAATCAGCTTGAAGAAGATCTCAAGAATGATAGTCCATCCATAGATGACAATGACGAAGAGATAAGCGAAGAAGACCTTGCTAGGCTTGAACGTGAGTTAGAGGAGGCTCTGGGGGATGATGATGAGCTATTAGGAATGTTTAACTCGATTACAGATGAAATAGAAAGTAATAATGATGCCGAAGAGGTAGATGAGGAGGAGGAGGAGGAGGAAGAGGATGATGAGGATGAAGAAAGACCAGTAAAGCTCAAAAATTGGCAACTTCGAAGATTAGCTTCCGCTCTGAAAACTGGCCGCCGTAAAACTAGTATTAAAAGTCTAGCTGCTGAGCTTTGTCTTGATAGGGCAGTTGTTCTTGAATTGCTTCGTGAACCCCCTCCAAATCTTCTGCTTATGAGTGCTGCTTTACCGGATAAACCTGTGCCAACAATCACAGTGCCTGAAACTGAACCTGTGGAAGCTGTTCCTTTGGACACTACTAGAGGAGCTGTGGAAGCTGCAGAACCTGCAGAACCTGAGGTCAAGGGGAAGGTGCCAGTGCATGTTATGCAAAGCAGATGGTCTGCCCAAAAGAGACTGAAGAAAGTGCAAGTTGAAACCCTTGAAAGAGTTTATAGAAGAACAAAGCGACCTACTAATGCAATGATTAGCAGCATTGTGCACGTGACAAACCTACCCAGAAAAAGAGTTGTGAAATGGTTCGAAGATAAGCGCACTGAAGATGGTGTTCCTGAGCATCGCCTCCCATTCCAACGGTCCACTTCTGAAACTGTCTTTTCCCCTTGA 1053 0.4539 MALASWNLTSLAFKGLLSASHDQRLFSAAQPTSNLILPHHCLSRSVLAFSRRRKSNSPVQSSKKNKKSSAHNNAEEDADLDEDAFEALFNQLEEDLKNDSPSIDDNDEEISEEDLARLERELEEALGDDDELLGMFNSITDEIESNNDAEEVDEEEEEEEEDDEDEERPVKLKNWQLRRLASALKTGRRKTSIKSLAAELCLDRAVVLELLREPPPNLLLMSAALPDKPVPTITVPETEPVEAVPLDTTRGAVEAAEPAEPEVKGKVPVHVMQSRWSAQKRLKKVQVETLERVYRRTKRPTNAMISSIVHVTNLPRKRVVKWFEDKRTEDGVPEHRLPFQRSTSETVFSP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0509 350 MobiDBLite consensus disorder prediction 331 350 - -
Vvi4g0509 350 Coils Coil 108 135 - -
Vvi4g0509 350 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 47 343 - -
Vvi4g0509 350 Coils Coil 140 167 - -
Vvi4g0509 350 Gene3D - 274 334 - -
Vvi4g0509 350 MobiDBLite consensus disorder prediction 52 80 - -
Vvi4g0509 350 MobiDBLite consensus disorder prediction 52 67 - -
Vvi4g0509 350 SUPERFAMILY Homeodomain-like 276 336 IPR009057 -
Vvi4g0509 350 ProSiteProfiles 'Homeobox' domain profile. 273 333 IPR001356 GO:0003677
Vvi4g0509 350 MobiDBLite consensus disorder prediction 141 170 - -
Vvi4g0509 350 MobiDBLite consensus disorder prediction 144 166 - -
Vvi4g0509 350 CDD homeodomain 276 327 IPR001356 GO:0003677
Vvi4g0509 350 Pfam Homeodomain 281 328 IPR001356 GO:0003677
Vvi4g0509 350 SMART HOX_1 279 337 IPR001356 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi4g0509 Homeodomain 5.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0509 - - vvi:100254226 533.487