Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0501 ATGCATATCATCTTTGTAAATTTATGTAAAGTAGTTCTCTCCAGGTATTGTGATTGTTTTGCTGCCGGAATCTATTGCGCTGAAGGTTGTGCTTGCGTAGGATGCTTCAACAGAGCTGAATATGATGATAGAGTTCTTGAGACACGGAAACAAATTGAATCTCGAAATCCTCTCGCATTTGCTCCAAAGATTGTCCCACCCGTCAATGGGTCTCCAATAAATAGTGGGGAAGATGGAAGGTCAACACCATCATCAGCGAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAATGTGTTTGAAAAAATACTGCGAGTGCTATCAGGCTAATGTTGGATGTTCTGCTGGATGCCGTTGTGAGGGTTGTAAAAATGTCTATGGCAGGAAGGAAGAATATGGTGCATTCAAAGAAATGATGAGCAGAAGAGCCAATGATGATAGATTGGAAAGTTCTTTTGACAAGAAGCTGGAAATGGTTGCAGCAAGGAGTGACTTCTTACGCCCTGAGCTTTGTAATCCACATAACATGACACCCATGACGCCATCATTTCAGTGCTCAGACCATGGAAACGATGCAGCAAATTTTCAAATTCCTTCCAGAAGATATGCTCAATCACCAGAATCTGATTTTTCGATCTTATCGTCTTATGGAAAATCCCCAGTATCTCCAAAGAATTCAGATAGTCACAATATTCTCCCTGAACCAGGAAAAGAAATTTGGGATATGGCTTGTTATGAGCATGAATTTGAGTATGGTAATGCAGAAAAAGTAGATCAATTCACTCCAGGATGTGACAGACTTTCTGATGTGTGCCATTTCACTTCATTGCCAAGCTCTCTTCCAACAACAGCCATGAATCCTTCAGCTTCATCCAAAACAAGTGGATTGACAAATGTCTCAAGAGGCCAATTATGTCCTGGAAGTGACCATCTTGTGTCAGGTGGCTCCCTTCGTTGGCGTAGTTCACCAATTCCACCATCAACTCAGTTAGGTGAGACCAAAATTTTCCAGGGACTTGAATCTGACAATGAGCTTTATGACATACTGGAAGATGACACACCCACGATACTGAAAGATGCTTCTACTCCCACCAAGGCAGTAAAAGCAAGCTCCCCTAAGCAGAAACGGGTTTCTCCTCCAAAAATTCAATCGCATGAGCGTGGGTCATCCAGCTCCTTGGCAATCTTGAAAAGTGGCCGGAAGTTCATATTGCAGGCTGTTCCTTCTTTCCCACCTCTCACCCCATGCATTGATACCAAAAGCAGCTCCCATCAAAATTCAAGTGATCCTCAAGATAGTAGTAGCAATAAGTAA 1314 0.4262 MHIIFVNLCKVVLSRYCDCFAAGIYCAEGCACVGCFNRAEYDDRVLETRKQIESRNPLAFAPKIVPPVNGSPINSGEDGRSTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSAGCRCEGCKNVYGRKEEYGAFKEMMSRRANDDRLESSFDKKLEMVAARSDFLRPELCNPHNMTPMTPSFQCSDHGNDAANFQIPSRRYAQSPESDFSILSSYGKSPVSPKNSDSHNILPEPGKEIWDMACYEHEFEYGNAEKVDQFTPGCDRLSDVCHFTSLPSSLPTTAMNPSASSKTSGLTNVSRGQLCPGSDHLVSGGSLRWRSSPIPPSTQLGETKIFQGLESDNELYDILEDDTPTILKDASTPTKAVKASSPKQKRVSPPKIQSHERGSSSSLAILKSGRKFILQAVPSFPPLTPCIDTKSSSHQNSSDPQDSSSNK* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0501 437 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 13 38 IPR005172 -
Vvi4g0501 437 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 89 124 IPR005172 -
Vvi4g0501 437 MobiDBLite consensus disorder prediction 357 371 - -
Vvi4g0501 437 SMART CXC_2 87 128 IPR033467 -
Vvi4g0501 437 SMART CXC_2 9 41 IPR033467 -
Vvi4g0501 437 MobiDBLite consensus disorder prediction 65 88 - -
Vvi4g0501 437 MobiDBLite consensus disorder prediction 413 437 - -
Vvi4g0501 437 MobiDBLite consensus disorder prediction 356 391 - -
Vvi4g0501 437 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 16 420 IPR044522 GO:0003700
Vvi4g0501 437 ProSiteProfiles CRC domain profile. 5 127 IPR005172 -
Vvi4g0501 437 MobiDBLite consensus disorder prediction 415 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0501 Vvi-Chr4 4596157 4599280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0501 43 142 CPP Transcription Factor Family AT3G22760 32.039 5.64e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi4g0501 TCR 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0501 K21776 - vvi:100261127 848.195