Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0497 ATGACCAAGAAGAAGAATCCATTGGTCTATCTAGATGTGTCTATTGATGGAGATCCAATTGAAAGAATGGTTTTTGAGCTGTTCTCTGATGTTGCTCCCAAGACTGCAGAAAATTTTCGTGCACTCTGTACAGGTGAAAAAGGAATCGGTCCCAAAACTGGAAAGCCACTGCACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGGGTGGCGATTTCCTTAGACGAGATGGAAGTGGTGGTGAAAGCATATATGGTGGAAAATTTCCAGATGAGTCACCCAGGCTAAAGCATGATGGACCTGGCCTTCTGTCTATGTCAGTTGCCGATCGGGACACTGTTGGTTCTCAATTTATTGTCACCTTCAGTGCTAATCATCATCTTGATAGGAAGTATGTAGTATTTGGAAAGCTTGTACAAGGACATGAAGTTTTGAAGAGGATAGAAAGTGTTGGTGATGAGGAAGGGATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGAGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATGCTAATAGTCATGAAGTGCGGCGGAGGGAGAAGCACAAGAGATCTTCAAAAGAAAGAAGGAAAAAAAGAAGAAGATACGATACATCAGAATCAGAGTCTCTTTCTGATACAGACACTGAATCATCTGAATCTGATAGTGATTCTGACTCAGAATCATCTTCATACATAAGTTCTTCAAGTGAAGACAGACGGAAAAAAAGGAAGAGATCTAAGAGAGACAAATATAGACGTGGAAAAAGAAGGGATAAACGACGTGACAAAAAGCGCAAGAGACGTGATAAGAAATCAAAGCGCAGATCAAAAAGGTCATCGGATAGTCTTACTGATGAGGATAGCAATGGTAAAAGTGGCAGTAGCTCTGCTGATGATGGCACTGATGTTCGAGGGCCAGATTGCAACCCTAAAAAACCTCCTCAGCTAATAGCAGGAAATGGATCTCCTGTAGTTGAGGACAGAGAAGCTGTTTCCACTCGTCATAAAAAGGGGGAGGTGGCTGATGTGCTTGAAAAGGAAGAGGGTGAATCACCCAAGGAAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTCAAATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGGAGCCGAAGCATGAGTCCCAAAAGGACCATGAGTAAGAGTATGAGTATTAGTCCAAGGAGGAGTCTGAGCAAGAGCCCAAGTGTCAGCAGGAGTCAAAGTGTTAGCAGAAGCACTCCCCGCCCACCAAGAAGCAGAACTGTGAGCAGGAGTCCAAGTGTTAGTAGAAGGGCCCCACTGAGAAGCAGAACCGTGAGCAGAAGCCCAGCTCCAGCTAGAAGTGATAGCAGCGGGAGCCCAGCTAGAAGCCTCAGCAGAAGTCCAGTGAAGGTCAGTAGAGGAAGAAGCTTCAGTAGGAGCCCAGTGAGGACCCGAACTCGGAGGAGCATTAGCAGGAGCCCGGTTAGGTCACTGTCTCGAAGAAGTCCAAGCAGGAGCCCACCAAGAACCTCATCAAGAAAATCAGTTAGCAGAAGCCCTGTGAGGATTTCAAAAAGTGGTGTCAGCAGAAGCCCTATTAAATCCTCCCGGAGAAGCATTAGTAGAAGCTCTGGCAGAGCTCCTTCAAGGAAAAGTGTGAGTCGAAGCCCAAATAGGGTGCCTAGCAGGAATAATCGTCGCAGCTATTCTAGAAGTCCTGCAAGCTCGGGGCGTAGGGCAAGGTCACCTGCTTCTGATCGTTCAAGGACTGTGTCAAGAAGTCCTTCCCCGGATGGGTCCCCCAAGCGCATCAGAAGGGGACGGGGTTTTAGTGAGCGATACTCTTATGCACGGCGATACAGGACTCCATCTCCAGATCGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACCAAGAGGAAGAACCCCTCCTAGATACAGAGGCAGGAGAAGTAGGACGCGGAGTCCAAGTGCTTCACGTAGCCCAATCCGCTACCGTAAACGACGTTATAGTCGTAGTCCTGTTCGCAGTCGATCCCCAGTTGAGCCATCTAGATACCGTGTCTCCCCTCGCCCTGAGAAACGGAGGTCACCATCTAGGAGCAGAAGCCCATCAGCATCTAGATCCTCACTGGATTCCCAGTCGCCCAAGAAAGCAAGCAAAGATGAGTCAAGATCATCTTCTGAAAGTCCATCTGGGAAGAAGGGCTTGGTTTCATATGGTGATGGGTCTCCAGATTCTGGGCAAAGGTGA 2391 0.4684 MTKKKNPLVYLDVSIDGDPIERMVFELFSDVAPKTAENFRALCTGEKGIGPKTGKPLHYKGSFFHRIIKGSMVQGGDFLRRDGSGGESIYGGKFPDESPRLKHDGPGLLSMSVADRDTVGSQFIVTFSANHHLDRKYVVFGKLVQGHEVLKRIESVGDEEGIPTATVKIIYCGEIPEEKRKSIKSKIGKDASSDANSHEVRRREKHKRSSKERRKKRRRYDTSESESLSDTDTESSESDSDSDSESSSYISSSSEDRRKKRKRSKRDKYRRGKRRDKRRDKKRKRRDKKSKRRSKRSSDSLTDEDSNGKSGSSSADDGTDVRGPDCNPKKPPQLIAGNGSPVVEDREAVSTRHKKGEVADVLEKEEGESPKENGDRRSNGIEEVKSDRSAERQPDVVDDHPGKSRSRSMSPKRTMSKSMSISPRRSLSKSPSVSRSQSVSRSTPRPPRSRTVSRSPSVSRRAPLRSRTVSRSPAPARSDSSGSPARSLSRSPVKVSRGRSFSRSPVRTRTRRSISRSPVRSLSRRSPSRSPPRTSSRKSVSRSPVRISKSGVSRSPIKSSRRSISRSSGRAPSRKSVSRSPNRVPSRNNRRSYSRSPASSGRRARSPASDRSRTVSRSPSPDGSPKRIRRGRGFSERYSYARRYRTPSPDRSPVRSYRYNNRIDRDRYPYRRYDRSPRRYRSPPRGRTPPRYRGRRSRTRSPSASRSPIRYRKRRYSRSPVRSRSPVEPSRYRVSPRPEKRRSPSRSRSPSASRSSLDSQSPKKASKDESRSSSESPSGKKGLVSYGDGSPDSGQR* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0497 796 MobiDBLite consensus disorder prediction 657 681 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 346 406 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 202 216 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 761 775 - -
Vvi4g0497 796 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 MobiDBLite consensus disorder prediction 408 503 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 623 639 - -
Vvi4g0497 796 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 173 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vvi4g0497 796 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vvi4g0497 796 Gene3D - 1 183 IPR029000 -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 682 700 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 258 293 - -
Vvi4g0497 796 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 181 796 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 181 201 - -
Vvi4g0497 796 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 515 621 - -
Vvi4g0497 796 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0497 Vvi-Chr4 4566088 4576275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0497 26 170 U-box Gene Family AT5G67530 42.177 1.43e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0497 K09566 - vvi:100264514 847.81