Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0496 ATGGCTGATACTTCTTTTCCTCCCAACTTACTGCCCGACGAGGCGAGCCCTGAATGGATGAACAAAGGCGACAATGCCTGGCAACTCACTGCCGCCACTCTCGTCGGTCTCCAGACTGTTCCGGGGCTGATCATCCTTTATGGAGGTGCAGTGAAGAAGAAATGGGCTGTGAATTCAGCTTTCATGGCGTTCTACGCCTTCGCCTGTGTCCTTATCTGCTGGGTGGGGTGGGGATATAGAATGTCGTTTGGGACGAAGCTTGTTCCATTTTGGGGGAGGGCTAATGTTGCCTTGGACCAAGTTTATCTCCTGGACCCGGCCTTTATTGGGAAGTTCCCACAGGCGACGATGGTGTTTTTTCAATTCGTTTTTGCAGCGATCACTGTGGTTTTGATTGCGGGAGCCTTGTTGGGGCGGATGAATTTTTACGCGTGGATGTTGTTTGTGCCCTTGTGGCTGACGTTTTCGTACACCTTTGTAGCATTTAGTATATGGTGTCCATCAGGTTTTCTCGCTAAGGCTGGGATTATAGACTACTCTGGTGGATATGTGATCCATTTGTCTTCTGGGGTTGCTGGCTTCACTGCAGCATATTGGGTTGGTCCTCGGCTAACCAAGGACAGAGAAAGGTTCCCTCCTAACAACATCCTTCTTATGATGGCTGGGGCAGGATTGCTGTGGATGGGTTGGACAGGGTTCAATGGTGGGGATCCTTATGTAGTGAGTGTCGATGCTTCGTTGGCCGTTTTGAACACGCATGTGTGCACTGCCACTAGCCTGCTCACATGGCTAATCCTCGACATTGCGGTCTTTGGAAAAGCTTCTATAATTGGTGCAGTGCAAGGCATGATCACTGGCTTGGTTTGCATCACACCTGCAGCTGGCTCCATTCCCTGGTTCACCATGATGGTTGTCCACAAAAAATCTGAGCTCCTTCAGAAAGTGGACGACACAATGGCTGTTCTGCATACTCACGCCATTGCTGGAAGCCTCGGAGGAATCCTGACCGGTCTATTTGCTTCCCCAAAGCTTAACCGTTTGTTCTATGGCTACGGAGTTGATGTAGATTCCACTTATGTTGGCCTATTTTATGGTCTTCACATGGGAGAAGTCAGTAAGGGATTCAGGCAAATTGGAATTCAGCTTCTGGGGATTGTGTTTGTGCTTGTGTTTAACGTCATAGCCACAAGCCTAATATGTCTTGTGGTGCAACTCATCGTGCCCCTGAGAATGTCTGATGAAGATATGGAGATTGGGGATGAAGCAGCTCATGGGGAGGAGGCCTATGCTATCTGGGGTCAAGGTGACAAGCTTGAGAACTCAAGGTATGGGAGTTCAGTCTACGGTGATGTTGAATTGCCTATGCCCAAGCCCAGGGGAGCTGGCCAAGTTGAGATGACATGA 1404 0.495 MADTSFPPNLLPDEASPEWMNKGDNAWQLTAATLVGLQTVPGLIILYGGAVKKKWAVNSAFMAFYAFACVLICWVGWGYRMSFGTKLVPFWGRANVALDQVYLLDPAFIGKFPQATMVFFQFVFAAITVVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPSGFLAKAGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLTKDRERFPPNNILLMMAGAGLLWMGWTGFNGGDPYVVSVDASLAVLNTHVCTATSLLTWLILDIAVFGKASIIGAVQGMITGLVCITPAAGSIPWFTMMVVHKKSELLQKVDDTMAVLHTHAIAGSLGGILTGLFASPKLNRLFYGYGVDVDSTYVGLFYGLHMGEVSKGFRQIGIQLLGIVFVLVFNVIATSLICLVVQLIVPLRMSDEDMEIGDEAAHGEEAYAIWGQGDKLENSRYGSSVYGDVELPMPKPRGAGQVEMT* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0496 467 SUPERFAMILY Ammonium transporter 19 411 - -
Vvi4g0496 467 Pfam Ammonium Transporter Family 26 429 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi4g0496 467 Gene3D Ammonium transporter AmtB like domains 10 445 IPR029020 -
Vvi4g0496 467 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi4g0496 467 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886
Vvi4g0496 467 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886
Vvi4g0496 467 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886
Vvi4g0496 467 PANTHER AMMONIUM TRANSPORTER MEP2 9 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi4g0496 467 FunFam Ammonium transporter 9 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0496 Vvi-Chr4 4560587 4562817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0496 115 457 Inorganic Solute Cotransporters AT2G38290 56.983 2.94e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0496 K03320 - vvi:100249173 939.488