Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0487 ATGGTGCATAGACGAAAGAGAGGCGGATTGCTGAGGGGAGGATGGTGTGGAGGAGGTGGCGAAGAAGAGGCCATTGAGCAGTTGTCAAGAGACGACGCAAGCCATTTCAGCGTCACAAGTGCTATTCTCCCTTCTCTTGGCGCACGTAGCAACCGCAGAATCAATCTCCGTCGCTTCATTGTCTCTCCTTTTGATGCCCGTTACAGACTCTGGGAGACATATCTGGTATTTCTGGTCTTCTATACAGCATGGGTATCTCCATTTGAGTTTGGATTCCTCGAAGAACCAAAGGGGCCTCTCTCCATTGCTGATAATGTAGTTAATGGGTTTTTTGCCATTGATATTATCTTGACCTTCTTTGTTGCCTACCTCGATAGATCTACTTACCTCCTCGTTGACAATCACAAGCTAATTGCTTGGAGATACACGAAAACATGGTTAGCCTTTGATGTCATTTCCACAATCCCTTCTGAACTTGCTCGGAAAATTTTGCCCAAACCTCTTAAAGAATATGGCTACTTCAATATGCTCCGTCTCTGGCGTCTCCGAAGAGTCAGTTCTATGTTTGCCAGATTGGAGAAAGATAGGAACTTTAACTACTTTTGGGTTCGATGTGCAAAGCTTATTTGTGTTACTCTATTTGCAGTTCACTGTGCTGGTTGCTTCTACTATCTCCTTGGTTCTCAACACGGTGACCCAAAGAAGACATGGCTTGGGTTGGTCATGGGGGACCTTAATACCCACAGTTTGTGGCAACGATACGTGACCTCAATGTACTGGTCAATCACCACTCTTACAACTACGGGCTATGGCGATTTGCATGCAGTGAATACAAGGGAGATGGTGTTTGACATCTTCTATATGCTCTTTAATCTTGGATTAACATCATATTTGATTGGGAATATGACCAACTTGGTTGTCCATGGTACCAGTCGAACTAGGAAATTTAGAGATAGTATTCAAGCTGCCTCAAGTTTTGCACTGAGGAATCAACTACCTGTACGCCTGCAAGATCAAATGCTTGCTCACTTGAGTTTGAGGCATAGAACAAACTCAGAAGGGCTGCAACAGCAAGAGACCCTAGAAGTCCTTCCTAAAGCCATTCGATCAAGTATTTCACACTATCTCTTCTACTCACTTGTGGACAAAGTGTACTTGTTTCGTGGTGTATCAAATGACTTACTTTTCCAACTGGTTTCAGAGATGAAGCCTGAGTATTTTCCTCCCAAAGAAGACATCATTTTGCAGAATGAAGCACCTACAGACTTGTATGTACTGGTTACTGGTGTTGTGGAGCTCATTGAACGCAGGAATGCGATAGAACAGGTTGTTGGAGAGATAAGGACAGGAGATGTCTGTGGTGAGATAGGTGTGCTTTGTTACAGGCCACAACTGTTCACGGCTAGGACCAAACGACTGTGTCAGCTGCTTCGTCTGAACCGTACTGCACTTCTAAATCTTGTTCAGGCAAACGTTGGAGATGGAGCAATAATCATAAACAATCTACTTCAGCATTTGAAAGAGCACAAAAACCCAGTAATGGAAGGAGTTTTGGCTGACATAGAGAGCATGCTAGCTCAGGGAAGAATGGAATTGCCTCTCAGTTTGTGTTTTGCAGTTTTGAGAGGAGATGATCTATTGTTGCATCAGTTGCTGAAACGTGGTTTGGATCCAAACGAATTAGACAGCAATGGACGAACTCCTCTGCATATTGCAGCGTCCAAAGGGAGAGAACAATGTGCACACCTGCTTCTTGAATATGGAGCAAACCCTAATGGCAAAGATTCAGAAGGAATTGTTCCTCTGTGGGATGCCATTTTGGAGAGAGATGAATCCATGATCAAACTACTCATGGACAATGGTGCGAAGATACCGCTAAGCAATGTGGGTCAGTATGCATGCACTGCTGTTGAACGAAATGACCTAGACTTGCTCAAAGACCTTGTTCGCTTTGGTGGGGACGTAACACATCCCAGTAGCTCTGGCACCACTGCACTTCATGCAGCAACCTCTGAAGCAAACATCGAAATAGTTAAGTTTCTGCTAGATCAAGGAGCTGATGTTGACAAGCTAGATAACGATGGGTGGACCCCAAGGACTTTGGCTGATCAACAGGGCCATGAAGAAATAAAAGTTCTGTTCCAAACCAAGCGGGAGACTAAAAAACTAACCCCTGTGCCAGCTACCAAGAAGCCAGGGGTCCCCTTCCTCGGGAAGTTCAAGAGCGACTCATATCTACAGCCCTTTCAGCATGATAGAGAATCAACAGGACTTGAGGTGTCATGGATAGATGATAACCGTCCAAGGCGAAGGGTCAACAATTTCAACAATTCACTCTTTGGGATCATGTCATCTGTCAATACACGTGAGAGAAAGGGCTTTATTCGATCTGCAGCCAGTTTTGCTACTTCCCCAAGACAAAGGGACTTTCCTGCTAGAGTGACACTTAGCTGCCCAGAAAAAGGTGAAGTAGCAGGGAAGCTGGTTCCTCTGCCACAGTCCCTTCAGGAGCTACTGGATATCGGTGCCAAAAAATTCAAGTTTTCTCCTACAAAAGTTGTAACCAAAGAAGGAGCAGAAGTTGAAGACATAGAGCTTATCAGAGATGGTGATCATCTCATTCTGGTGAGTGAGGATGGAGATGAAAATTCTAAGCAAGTAGAGGCTGGGACTAATTTGGATTCTCCCCCACACTAA 2697 0.4468 MVHRRKRGGLLRGGWCGGGGEEEAIEQLSRDDASHFSVTSAILPSLGARSNRRINLRRFIVSPFDARYRLWETYLVFLVFYTAWVSPFEFGFLEEPKGPLSIADNVVNGFFAIDIILTFFVAYLDRSTYLLVDNHKLIAWRYTKTWLAFDVISTIPSELARKILPKPLKEYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLGSQHGDPKKTWLGLVMGDLNTHSLWQRYVTSMYWSITTLTTTGYGDLHAVNTREMVFDIFYMLFNLGLTSYLIGNMTNLVVHGTSRTRKFRDSIQAASSFALRNQLPVRLQDQMLAHLSLRHRTNSEGLQQQETLEVLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKPEYFPPKEDIILQNEAPTDLYVLVTGVVELIERRNAIEQVVGEIRTGDVCGEIGVLCYRPQLFTARTKRLCQLLRLNRTALLNLVQANVGDGAIIINNLLQHLKEHKNPVMEGVLADIESMLAQGRMELPLSLCFAVLRGDDLLLHQLLKRGLDPNELDSNGRTPLHIAASKGREQCAHLLLEYGANPNGKDSEGIVPLWDAILERDESMIKLLMDNGAKIPLSNVGQYACTAVERNDLDLLKDLVRFGGDVTHPSSSGTTALHAATSEANIEIVKFLLDQGADVDKLDNDGWTPRTLADQQGHEEIKVLFQTKRETKKLTPVPATKKPGVPFLGKFKSDSYLQPFQHDRESTGLEVSWIDDNRPRRRVNNFNNSLFGIMSSVNTRERKGFIRSAASFATSPRQRDFPARVTLSCPEKGEVAGKLVPLPQSLQELLDIGAKKFKFSPTKVVTKEGAEVEDIELIRDGDHLILVSEDGDENSKQVEAGTNLDSPPH* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0487 898 FunFam Potassium channel KAT3 70 308 - -
Vvi4g0487 898 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Vvi4g0487 898 FunFam Potassium channel KAT2 374 510 - -
Vvi4g0487 898 ProSiteProfiles Ankyrin repeat region circular profile. 564 595 - -
Vvi4g0487 898 SUPERFAMILY cAMP-binding domain-like 311 506 IPR018490 -
Vvi4g0487 898 SMART cnmp_10 386 503 IPR000595 -
Vvi4g0487 898 Gene3D Jelly Rolls 351 512 IPR014710 -
Vvi4g0487 898 Pfam Cyclic nucleotide-binding domain 405 490 IPR000595 -
Vvi4g0487 898 Pfam Ankyrin repeats (3 copies) 536 625 IPR002110 GO:0005515
Vvi4g0487 898 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Vvi4g0487 898 ProSiteProfiles Ankyrin repeat profile. 564 596 IPR002110 GO:0005515
Vvi4g0487 898 ProSiteProfiles KHA domain profile. 813 893 IPR021789 -
Vvi4g0487 898 PANTHER POTASSIUM CHANNEL AKT1 34 878 IPR045319 GO:0005249|GO:0006813
Vvi4g0487 898 SUPERFAMILY Voltage-gated potassium channels 63 307 - -
Vvi4g0487 898 Gene3D - 532 716 IPR036770 -
Vvi4g0487 898 Pfam KHA, dimerisation domain of potassium ion channel 813 875 IPR021789 -
Vvi4g0487 898 Pfam Ion transport protein 69 313 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g0487 898 CDD CAP_ED 386 491 IPR000595 -
Vvi4g0487 898 SMART ANK_2a 531 560 IPR002110 GO:0005515
Vvi4g0487 898 SMART ANK_2a 661 690 IPR002110 GO:0005515
Vvi4g0487 898 SMART ANK_2a 597 626 IPR002110 GO:0005515
Vvi4g0487 898 SMART ANK_2a 564 593 IPR002110 GO:0005515
Vvi4g0487 898 PRINTS Ankyrin repeat signature 677 691 IPR002110 GO:0005515
Vvi4g0487 898 PRINTS Ankyrin repeat signature 565 580 IPR002110 GO:0005515
Vvi4g0487 898 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Vvi4g0487 898 ProSiteProfiles Ankyrin repeat region circular profile. 661 693 - -
Vvi4g0487 898 MobiDBLite consensus disorder prediction 877 898 - -
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 104 114 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 81 88 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 PRINTS EAG/ELK/ERG potassium channel family signature 115 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0487 898 ProSiteProfiles cAMP/cGMP binding motif profile. 386 488 IPR000595 -
Vvi4g0487 898 Gene3D - 70 307 - -
Vvi4g0487 898 SUPERFAMILY Ankyrin repeat 536 714 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0487 Vvi-Chr4 4478872 4485156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0487 20 875 Ion Channels AT2G25600 62.398 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0487 K21867 - vvi:100242278 1733.38