Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0477 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTCTACATCCATGATTATTTAGTGAAGAGGGATTTAAAGGCATCTGCTCAGGCCTTTCAAGCTGAGGGGAAAGTATCATCTGATCCTGTTGCTATTGATGCTCCGGGTGGTTTTCTATTCGAATGGTGGTCGGTTTTTTGGGATATATTCATTGCTAGGACTAATGAAAAACACTCAGAGGTTGCTGCATCTTATATTGAGACTCAATTAATTAAAGCAAGGGAACAACAACAACAGCAACAGCAGCAACAACAGCAACCCCAACAACCACAGCATCAACAACAACAACAGCAGCAGCAACAATTGCAGATGCAACAGCTGTTATTGCAGAGGCATGCTCAACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAACAGCAACCCCAGCAACAGCAACGTAGAGATGGTGCCCATCTCTTAAATGGAACTACAAATGGGCTTGTTGGAAATGATCCTCTTATGCGGACAAATCCTGCCACTGCCAATGCTTTGGCTACAAAGATGTATGAGGAGAGGTTAAAATTGCCAATTCAGCGGGATTCTTTGGATGATGCAACAATGAAGCAAAGATTTAGTGAGAATGTGGGCCAGCTTTTGGATCCAAATCATGCCACAATATTGAAGTCTGCTGCAGCAGCTGGCCAGCCTTCAGGGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCGGATATAAAGAGTGAGATGAATCCAGTGTTGAACCCCAGAGCTGGTGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTGGTAACAATTTGACCCTGAAAGGATGGCCGCTCACGGGATTGGATCAACTTCGCTCTGGGCTACTTCAGCAGCCAAAACCTTTCATCCAAGCTGCTCCTCAGCCCTTTCATCAGCTCCAGATGCTACCACAACACCAGCAACAGCTTTTGCTTGCACAACAAAGTTTGACATCCCCTCCCAGTGATGAAAGCAGAAGGCTGAGAATGCTTCTGAATAATCGGAATATGAATCTTGGGAAGGACGGTCCTTCAAATTCCATTGGTGATGTTCCAAATGTTGGCTCACCCCTGCAACCCGGTTGCGCTGTTTTGCCTCGTGGAGATACTGAGATGCTAATGAAGTTAAAAATGGCCCAAATGCATCATCAGCAGCAACAACAACAGCAGCAGCAACAAAACAGTAATCAACCACAGCAGCAGCAGCAACAGCAGCTTCAGCAGCATGCGCTCTCAAGTCAGCAATCTCAGAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGGCTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCTGTTTCATCTTCTGGTCCAGCCAATAGCTCAGGAACTGCAAACACAGCAGGACCCTCCCCAAGCTCAGCACCCTCTACACCGTCAACTCACACACCTGGAGATGTGATCTCAATGCCTGCTTTGCCACACAGTGGTAGCTCTTCAAAGCCATTGATGATGTTCAGCACTGATGGTACTGGAACTCTTACATCACCGTCAAATCAGTTGGCTGATATGGATCGTTTTGTGGAAGATGGTTCCCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTCAGTAAAGGGTTTACATTTACGGAAGTCAGCTCCGTTAGAGCGAGTGCAAGTAAAGTTATCTGTTGCCACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGAATATTAAGAACGGTAGCTGTGCAAGGGTATTCAAGGGTGGTACGGCCCAAATGAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCGATACTGGACGTGGAGACACAAGCTTGTCGGCATTCATTACAGGGACATACAAAACCAATTCATTCTGTCTGCTGGGATCCTTCTGGTGAGTTCTTGGCATCTGTAAGTGAGGATTCTGTCAGAGTTTGGACGCTTGGATCAGGAAACGAAGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCTCATGATGGACTAATAGCTGCCTTGGCTGTATCAACTGTGTCTGGCTTGGTTGCTTCAGCTAGCCATGACAAGATTGTCAAGCTCTGGAAGTGA 2706 0.456 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQRRDGAHLLNGTTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSDESRRLRMLLNNRNMNLGKDGPSNSIGDVPNVGSPLQPGCAVLPRGDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK* 902
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 869 901 IPR001680 GO:0005515
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Vvi4g0477 901 MobiDBLite consensus disorder prediction 416 465 - -
Vvi4g0477 901 SUPERFAMILY WD40 repeat-like 613 901 IPR036322 GO:0005515
Vvi4g0477 901 FunFam Transcriptional corepressor LEUNIG 748 901 - -
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Vvi4g0477 901 MobiDBLite consensus disorder prediction 472 532 - -
Vvi4g0477 901 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 824 IPR001680 GO:0005515
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 658 IPR001680 GO:0005515
Vvi4g0477 901 Pfam WD domain, G-beta repeat 864 901 IPR001680 GO:0005515
Vvi4g0477 901 Pfam WD domain, G-beta repeat 779 814 IPR001680 GO:0005515
Vvi4g0477 901 Pfam WD domain, G-beta repeat 656 691 IPR001680 GO:0005515
Vvi4g0477 901 Pfam WD domain, G-beta repeat 617 648 IPR001680 GO:0005515
Vvi4g0477 901 Pfam WD domain, G-beta repeat 699 735 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 695 735 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 862 901 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 821 860 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 652 691 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 777 815 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 738 774 IPR001680 GO:0005515
Vvi4g0477 901 SMART WD40_4 610 649 IPR001680 GO:0005515
Vvi4g0477 901 MobiDBLite consensus disorder prediction 414 551 - -
Vvi4g0477 901 FunFam Transcriptional corepressor LEUNIG 596 747 - -
Vvi4g0477 901 Gene3D - 593 747 IPR015943 GO:0005515
Vvi4g0477 901 Gene3D - 748 901 IPR015943 GO:0005515
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 700 IPR001680 GO:0005515
Vvi4g0477 901 SMART Lish 8 40 IPR006594 GO:0005515
Vvi4g0477 901 Coils Coil 117 150 - -
Vvi4g0477 901 CDD WD40 613 901 - -
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 869 901 - -
Vvi4g0477 901 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vvi4g0477 901 Pfam LisH 10 36 IPR006594 GO:0005515
Vvi4g0477 901 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 901 - -
Vvi4g0477 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Vvi4g0477 901 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi4g0477 Vvi-Chr4 4367345 4383995 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0477 696 900 Miscellaneous Gene Families AT5G08390 25.238 5.97e-14 74.3
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vvi4g0477 WD40 0.018 CL0186
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0477 - - vvi:100266189 1504.58