Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g0477 | ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTCTACATCCATGATTATTTAGTGAAGAGGGATTTAAAGGCATCTGCTCAGGCCTTTCAAGCTGAGGGGAAAGTATCATCTGATCCTGTTGCTATTGATGCTCCGGGTGGTTTTCTATTCGAATGGTGGTCGGTTTTTTGGGATATATTCATTGCTAGGACTAATGAAAAACACTCAGAGGTTGCTGCATCTTATATTGAGACTCAATTAATTAAAGCAAGGGAACAACAACAACAGCAACAGCAGCAACAACAGCAACCCCAACAACCACAGCATCAACAACAACAACAGCAGCAGCAACAATTGCAGATGCAACAGCTGTTATTGCAGAGGCATGCTCAACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAACAGCAACCCCAGCAACAGCAACGTAGAGATGGTGCCCATCTCTTAAATGGAACTACAAATGGGCTTGTTGGAAATGATCCTCTTATGCGGACAAATCCTGCCACTGCCAATGCTTTGGCTACAAAGATGTATGAGGAGAGGTTAAAATTGCCAATTCAGCGGGATTCTTTGGATGATGCAACAATGAAGCAAAGATTTAGTGAGAATGTGGGCCAGCTTTTGGATCCAAATCATGCCACAATATTGAAGTCTGCTGCAGCAGCTGGCCAGCCTTCAGGGCAAGTATTGCATGTTTCAGCCGGAGGTATGTCTCCACAAGTTCAAGCTCGGAATCAGCAACTACCAGGATCTACACCGGATATAAAGAGTGAGATGAATCCAGTGTTGAACCCCAGAGCTGGTGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTGGTAACAATTTGACCCTGAAAGGATGGCCGCTCACGGGATTGGATCAACTTCGCTCTGGGCTACTTCAGCAGCCAAAACCTTTCATCCAAGCTGCTCCTCAGCCCTTTCATCAGCTCCAGATGCTACCACAACACCAGCAACAGCTTTTGCTTGCACAACAAAGTTTGACATCCCCTCCCAGTGATGAAAGCAGAAGGCTGAGAATGCTTCTGAATAATCGGAATATGAATCTTGGGAAGGACGGTCCTTCAAATTCCATTGGTGATGTTCCAAATGTTGGCTCACCCCTGCAACCCGGTTGCGCTGTTTTGCCTCGTGGAGATACTGAGATGCTAATGAAGTTAAAAATGGCCCAAATGCATCATCAGCAGCAACAACAACAGCAGCAGCAACAAAACAGTAATCAACCACAGCAGCAGCAGCAACAGCAGCTTCAGCAGCATGCGCTCTCAAGTCAGCAATCTCAGAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGGCTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCTGTTTCATCTTCTGGTCCAGCCAATAGCTCAGGAACTGCAAACACAGCAGGACCCTCCCCAAGCTCAGCACCCTCTACACCGTCAACTCACACACCTGGAGATGTGATCTCAATGCCTGCTTTGCCACACAGTGGTAGCTCTTCAAAGCCATTGATGATGTTCAGCACTGATGGTACTGGAACTCTTACATCACCGTCAAATCAGTTGGCTGATATGGATCGTTTTGTGGAAGATGGTTCCCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTCAGTAAAGGGTTTACATTTACGGAAGTCAGCTCCGTTAGAGCGAGTGCAAGTAAAGTTATCTGTTGCCACTTCTCATCAGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTACTAGTTACTCGCTACGTACTTTTACTGGACATTCTGCGTCTGTTATGTCGTTGGACTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGAATATTAAGAACGGTAGCTGTGCAAGGGTATTCAAGGGTGGTACGGCCCAAATGAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCGATACTGGACGTGGAGACACAAGCTTGTCGGCATTCATTACAGGGACATACAAAACCAATTCATTCTGTCTGCTGGGATCCTTCTGGTGAGTTCTTGGCATCTGTAAGTGAGGATTCTGTCAGAGTTTGGACGCTTGGATCAGGAAACGAAGGGGAGTGTGTTCATGAGTTGAGTTGTAATGGCAACAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCATCATTGCTGGTCATCGGTTGTTACCAGTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCTCATGATGGACTAATAGCTGCCTTGGCTGTATCAACTGTGTCTGGCTTGGTTGCTTCAGCTAGCCATGACAAGATTGTCAAGCTCTGGAAGTGA | 2706 | 0.456 | MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQRRDGAHLLNGTTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSDESRRLRMLLNNRNMNLGKDGPSNSIGDVPNVGSPLQPGCAVLPRGDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGLVASASHDKIVKLWK* | 902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 869 | 901 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 702 | 740 | - | - | |
| Vvi4g0477 | 901 | MobiDBLite | consensus disorder prediction | 416 | 465 | - | - | |
| Vvi4g0477 | 901 | SUPERFAMILY | WD40 repeat-like | 613 | 901 | IPR036322 | GO:0005515 | |
| Vvi4g0477 | 901 | FunFam | Transcriptional corepressor LEUNIG | 748 | 901 | - | - | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 659 | 694 | - | - | |
| Vvi4g0477 | 901 | MobiDBLite | consensus disorder prediction | 472 | 532 | - | - | |
| Vvi4g0477 | 901 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 678 | 692 | IPR019775 | - | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 784 | 824 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 617 | 658 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | WD domain, G-beta repeat | 864 | 901 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | WD domain, G-beta repeat | 779 | 814 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | WD domain, G-beta repeat | 656 | 691 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | WD domain, G-beta repeat | 617 | 648 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | WD domain, G-beta repeat | 699 | 735 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 695 | 735 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 862 | 901 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 821 | 860 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 652 | 691 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 777 | 815 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 738 | 774 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | WD40_4 | 610 | 649 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | MobiDBLite | consensus disorder prediction | 414 | 551 | - | - | |
| Vvi4g0477 | 901 | FunFam | Transcriptional corepressor LEUNIG | 596 | 747 | - | - | |
| Vvi4g0477 | 901 | Gene3D | - | 593 | 747 | IPR015943 | GO:0005515 | |
| Vvi4g0477 | 901 | Gene3D | - | 748 | 901 | IPR015943 | GO:0005515 | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 659 | 700 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | SMART | Lish | 8 | 40 | IPR006594 | GO:0005515 | |
| Vvi4g0477 | 901 | Coils | Coil | 117 | 150 | - | - | |
| Vvi4g0477 | 901 | CDD | WD40 | 613 | 901 | - | - | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 869 | 901 | - | - | |
| Vvi4g0477 | 901 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 8 | 40 | IPR006594 | GO:0005515 | |
| Vvi4g0477 | 901 | Pfam | LisH | 10 | 36 | IPR006594 | GO:0005515 | |
| Vvi4g0477 | 901 | PANTHER | TRANSCRIPTION ACTIVATOR MSS11 | 2 | 901 | - | - | |
| Vvi4g0477 | 901 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 702 | 744 | IPR001680 | GO:0005515 | |
| Vvi4g0477 | 901 | MobiDBLite | consensus disorder prediction | 147 | 178 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g0477 | Vvi-Chr4 | 4367345 | 4383995 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi4g0477 | 696 | 900 | Miscellaneous Gene Families | AT5G08390 | 25.238 | 5.97e-14 | 74.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | LUG | Vvi4g0477 | WD40 | 0.018 | CL0186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g0477 | - | - | vvi:100266189 | 1504.58 |