Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0466 ATGGAGGACAGGAAGGATGTTATCAATGGCGGAGAAAATGGGAGCTCGAGTGAGGGTCGGCCACCGAACCCGATTTCGTCGGCGTATCGGCAGTGTTTCGGCAGTGCCAAGGTCAACGCGCCATGTAAGAAGTCCTTGGTTCGGCACCCATCTCTGCTGAAGATGAAGACAACAGAAAATTCTGTTGAATCAGGACTGAGTGTAGAAGATCATGAGACTGATTTCATTCCAATTGTTCGTTCTGGAGCATGGACGGACGTTGGGTTTCGAAAAAGCATGGAGGACGTGTATGTTTGTGTTGACAATTTTACAAGCGAATATGGGTTCAAGAATTTGAACGAAGAGCCTAATGCCTTCTATGGGGTTTTTGATGGTCATGGAGGAAAGCATGCTGCGGATTTTGTTTGCTACCATCTGCCAAGGTTCATTGTTGAGGATGAAGACTTTCCAAGGGAGATTGAGAGGGTTGTTGCTTCTGCTTTTCTGCAAACAGACAATGCTTTTGCAGAAGCTTGCTCCTTAGATGCCGCCCTTGCTTCTGGTACCACCGCATTGGCAGCTCTTGTCGTTGGAAGGTCATTGGTGGTGGCTAATGCTGGAGATTGTCGTGCAGTACTCTGTCGGCGTGGCAAGGCAATTGAAATGTCAAGGGACCACAAACCAGTTTGCTCCAAGGAAAAGAAGCGCATTGAAGCATGTGGAGGCTATGTCTATGATGGCTACCTCAATGGACAACTCAATGTTGCTCGAGCTTTAGGAGACTGGCACATGGAAGGACTGAAGGATGTGGATGGTGGACCCCTGAGTGCAGAGCCTGAGTTCATGACAACAAGACTTACTGAAGAAGATGAATTCCTCATCATAGGTTGTGATGGGATCTGGGATGTCTTTAGAAGCCAGAATGCTGTGGATTTTGCCAGGAGAAGACTTCAGGAACACAACGACCCGGCCTTGTGTAGCAAGGATCTAGTTGATGAGGCTTTAAAGAGAAAGAGTGGAGACAATCTGGCTGCTGTTGTGGTGTGCTTCCAACCCCAGGCCCCCCCTAACTTGGTTGCCCCACGACCAAGGGTGCAAAGGAGCATTTCTGCAGAGGGTTTGAGGGAGTTGCAGAGCTTCTTGGATGGCTTGGGAAAAGACTAG 1143 0.4873 MEDRKDVINGGENGSSSEGRPPNPISSAYRQCFGSAKVNAPCKKSLVRHPSLLKMKTTENSVESGLSVEDHETDFIPIVRSGAWTDVGFRKSMEDVYVCVDNFTSEYGFKNLNEEPNAFYGVFDGHGGKHAADFVCYHLPRFIVEDEDFPREIERVVASAFLQTDNAFAEACSLDAALASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEACGGYVYDGYLNGQLNVARALGDWHMEGLKDVDGGPLSAEPEFMTTRLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPALCSKDLVDEALKRKSGDNLAAVVVCFQPQAPPNLVAPRPRVQRSISAEGLRELQSFLDGLGKD* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0466 380 FunFam Probable protein phosphatase 2C 22 64 346 - -
Vvi4g0466 380 Pfam Protein phosphatase 2C 88 335 IPR001932 -
Vvi4g0466 380 Gene3D - 56 347 IPR036457 -
Vvi4g0466 380 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g0466 380 SUPERFAMILY PP2C-like 74 344 IPR036457 -
Vvi4g0466 380 PANTHER PROTEIN PHOSPHATASE 2C 59 341 IPR015655 GO:0004722|GO:0006470
Vvi4g0466 380 CDD PP2Cc 79 343 IPR001932 -
Vvi4g0466 380 MobiDBLite consensus disorder prediction 10 26 - -
Vvi4g0466 380 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Vvi4g0466 380 SMART PP2C_4 76 341 IPR001932 -
Vvi4g0466 380 ProSiteProfiles PPM-type phosphatase domain profile. 80 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0466 Vvi-Chr4 4215230 4224727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0466 8 378 PP2C-type Phosphatase Gene Family AT2G25620 68.571 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vvi4g0466 PP2C 5.4e-70 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0466 K14803 - vvi:100256157 758.829