Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0443 ATGCCCAGAAGTTTTGGAATTTTTCGTTCGAAATACAAAAAAAACAAACCTCGCTCTCAAGCCCCTCCCAGTCGCTGGTGGAGCTCTGGTAAGGGCCCTTTATCTGGATGTGAGGTCCCTAAACCCCCATCGATCACCGTGAAGCGAGACCAACGGAACGGTCTTTATGCTACCGGTGAGATCAACGATCAAGTTGAATCGCCGAGGGGGTTTCTGTTAGAATCACCGACATTGACCAATACTCCTCCAGGCCTCCACGGAACTCACAGGTTCTTCGTCACCATTGGCGAGTCGAACTCACTCGTCGAAGAAGCACGGATGTGCGTGTGGCTGTCCGACAGCACGAGCGGTCTGGGGCCCGCCGGAAGAGACAGCCACCTCAGGATGTCGAGGGACAGCGTCGCCGTTCCGACGTACTCGATGGATCCGCGCGACGAGTTCCGGCGGTCGATGGAGGAGATGGTGAGGTCGAGATTGGAGCAAAACCTGGCCGTTGATTGGGATTACTTGGTGGAGCTTGTGATGTGTTACGTGGAGTTGAATGAGAAAGAGGCTCGCAAGTATATATTGAAAGCCTTTGTGGACCTCATCGTGCCCTTGCGCCATATTCAAGGCGAGATTCCGGCGAAATCCCGACAAAATCGCTGTAGAATGCGGCTACCGGGGTTCGTAGCCTAA 678 0.5398 MPRSFGIFRSKYKKNKPRSQAPPSRWWSSGKGPLSGCEVPKPPSITVKRDQRNGLYATGEINDQVESPRGFLLESPTLTNTPPGLHGTHRFFVTIGESNSLVEEARMCVWLSDSTSGLGPAGRDSHLRMSRDSVAVPTYSMDPRDEFRRSMEEMVRSRLEQNLAVDWDYLVELVMCYVELNEKEARKYILKAFVDLIVPLRHIQGEIPAKSRQNRCRMRLPGFVA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0443 225 NCBIfam uncharacterized plant-specific domain TIGR01568 134 201 IPR006458 -
Vvi4g0443 225 MobiDBLite consensus disorder prediction 1 47 - -
Vvi4g0443 225 Pfam Transcriptional repressor, ovate 140 199 IPR006458 -
Vvi4g0443 225 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 90 200 IPR038933 GO:0045892
Vvi4g0443 225 ProSiteProfiles OVATE domain profile. 136 199 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0443 Vvi-Chr4 3979980 3980657 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi4g0443 Ovate 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0443 - - csin:114306100 157.532