Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0440 ATGTACAGAGTCATCACGGGCAAAATGCACCAAGGGGACATCTTTGGTTTTCTCAACCTGCTGAGACTGTGGCGGCTCAGACGTGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACACGCGTTTTAGCTACTTCTGGACAAGATACTGTAAACTAATTTGTGTGACGCTTTTTGCAGTGCACTCAGCAGGTTGCTTTTACTACTGGCTGGCCATCCATCATAAAACATCAAAGAAGACATGGATTGGAGCTCAGATTACGGACTTTGAACACAGAAGCATCTGGCTAGGTTACACCTATTCTATATATTGGTCAATTGTCACCCTCACAACAGTTGGCTATGGAGACTTGCATGCAGAAAATACAGGAGAGAAGGTCTTCAATATATTGTACATGCTATTCAACATTGGCCTCACCGCTTATTTAATTGGAAACATGACCAATCTCATTGTCCACAGTGCTATTCGAACATTTGCCATGAGGGATGCAATCAATGAGATTTTGCGATATGCAAGCAAGAATCGACTTCCAGAAGGCTTGAAAGAGCAAATGTTGGCACACATGCAACTCAAGTTCAAGACAGCTGAATTGCAGCAAGAAGAAGTGCTAGAGGACCTGCCCAAGGCAATAAGATCCAGCATAGCTCAGCATCTTTTCCATAAAACTGTTGAAAAGGCCTATCTTTTCAAAGGGATCTCTGATGACCTTGTCACCCAGTTGGTATCAGAGATAAAAGCAGAATATTTTCCTCCTAAGGTTGATATCATCTTACAAAATGAGATACCTACAGATTTCTACATTATAGCAGCAGGAGCAATGGATGTGCTGATATACAAGAATGGCACAGAGCAGTTTTTGACCAAACAAGGACCTGCAGAGATGGCAGGAGAAATTGGAGTGATTTTCAACATCCCACAACCTTTTACAGTGAGAACTAAGAGACTTTCCCAGGTCATCCGGATAAGTCATCATCATTTCAAGCAAATAGTGCAGCAACAGAACGAAGATGGAAAGACAATCATCTTGAATTTTGTTCAGTATTTGAGGAGTTTAAAGCAAGAGCTGCAGCAAGAAATACCATTTCTAACAGAATTGTTGGGTGACATGAACATAGAGCATGTGGAATCAAGTCAGGAACCACAAAATACAGAAACATTAAGATCGGATAATGATGAAGGCGCACATATTGAAGGAACACCAACTTCTTATCCATTATCAAGCACACTCCCAATGAGGGTGGTAATCCATGGGCATCATCCAAATGAAAATACAACAGACAGCAGTACAATGGGAAAAGTGATACATTTGACCGACTCGATAGAGGACCTTTTGGAATTAGCAGAGAAAAAGTTTGGCAAAAGGGGAAACACAATTCTCATGGCAAACGGCTCACAAGTGGAAGAATTGAATGCTCTAAGAGAGAACGACCACTTGTATATCTTTTGA 1446 0.4136 MYRVITGKMHQGDIFGFLNLLRLWRLRRVSELFTRLEKDTRFSYFWTRYCKLICVTLFAVHSAGCFYYWLAIHHKTSKKTWIGAQITDFEHRSIWLGYTYSIYWSIVTLTTVGYGDLHAENTGEKVFNILYMLFNIGLTAYLIGNMTNLIVHSAIRTFAMRDAINEILRYASKNRLPEGLKEQMLAHMQLKFKTAELQQEEVLEDLPKAIRSSIAQHLFHKTVEKAYLFKGISDDLVTQLVSEIKAEYFPPKVDIILQNEIPTDFYIIAAGAMDVLIYKNGTEQFLTKQGPAEMAGEIGVIFNIPQPFTVRTKRLSQVIRISHHHFKQIVQQQNEDGKTIILNFVQYLRSLKQELQQEIPFLTELLGDMNIEHVESSQEPQNTETLRSDNDEGAHIEGTPTSYPLSSTLPMRVVIHGHHPNENTTDSSTMGKVIHLTDSIEDLLELAEKKFGKRGNTILMANGSQVEELNALRENDHLYIF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0440 481 ProSiteProfiles KHA domain profile. 412 481 IPR021789 -
Vvi4g0440 481 Pfam Cyclic nucleotide-binding domain 248 332 IPR000595 -
Vvi4g0440 481 MobiDBLite consensus disorder prediction 375 401 - -
Vvi4g0440 481 FunFam Potassium channel KAT2 216 352 - -
Vvi4g0440 481 SUPERFAMILY cAMP-binding domain-like 157 349 IPR018490 -
Vvi4g0440 481 PANTHER POTASSIUM CHANNEL AKT1 3 355 IPR045319 GO:0005249|GO:0006813
Vvi4g0440 481 CDD CAP_ED 228 341 IPR000595 -
Vvi4g0440 481 Pfam KHA, dimerisation domain of potassium ion channel 412 480 IPR021789 -
Vvi4g0440 481 SMART cnmp_10 228 345 IPR000595 -
Vvi4g0440 481 Gene3D - 2 152 - -
Vvi4g0440 481 SUPERFAMILY Voltage-gated potassium channels 21 188 - -
Vvi4g0440 481 Gene3D Jelly Rolls 193 358 IPR014710 -
Vvi4g0440 481 ProSiteProfiles cAMP/cGMP binding motif profile. 228 347 IPR000595 -
Vvi4g0440 481 Pfam Ion transport protein 14 151 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi4g0440 481 PRINTS EAG/ELK/ERG potassium channel family signature 142 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0440 481 PRINTS EAG/ELK/ERG potassium channel family signature 98 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi4g0440 481 PRINTS EAG/ELK/ERG potassium channel family signature 124 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0440 Vvi-Chr4 3875392 3883903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0440 1 481 Ion Channels AT4G32650 61.914 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0440 K21867 - vvi:100242379 959.903