Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0437 ATGACAGAAATGATGGCCAATCATTCTGACTCTCAACATTTTGAGCTGAAAAACCTGAAAGAAATGATTTTCAATGTGAATGAAAGAGACGTTGTTAAGTCATGTGCTCAGCATTCCAATGGAGAGTGTATGGAGATCAAAGAGCCAACTGATCATGTAGAGATCACAGAAAAGGAATTGCTAGAGAAAGGCTATATGCAGTACGGATGTCCACATTATCGGAGAAGGTGCCGCATTAGAGCTCCATGTTGCAATGAGATTTTTGATTGTCGCCATTGTCATAATGAAGCAAAGAATAGTATTAAGGTTGACAAGGCACAGAGACATGACATTCCACGGCACCAAGTCCAGCAGGTGATATGTTCACTCTGTAACACTGAACAAGAGGTTCGTCAAGTTTGTATTAACTGTGGTGTATGTATGGGGAAATACTTCTGTGAGACCTGCAAACTATTCGATGATGATACATCTAAGAAACAGTATCATTGCAATGGGTGTGGAATTTGCAGAATTGGAGGGCGAGAGAACTTCTTCCACTGTTACAAATGCCGTTGCTGCTACTCTGTTCTGCTAAAGAACAGCCATCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTTGAGTATTTATTCGAGTCAACGGATGATGTGACTGTTATGCCGTGTGGACATACGATTCACCAAAACTGTTTGAAGGAGATGAGGGAACATTTACAATATGCATGCCCTCTCTGCTCCAAGTCTGTTTGTGATATGTCCAAGGTGTGGGAAAAATTTGACATGGAGATTGCAGCTATACCAATGCCAGAACCTTATCAGAACAAAATGGTTTGGATCCTTTGCAACGATTGTGGAAAAACCTCGAAAGTGCATTTCCATGTCCTGGCTCAGAAATGCCTAAATTGCAAGTCATACAACACTCGCCAAACCAGAGGCTGA 948 0.4198 MTEMMANHSDSQHFELKNLKEMIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCYKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTDDVTVMPCGHTIHQNCLKEMREHLQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNKMVWILCNDCGKTSKVHFHVLAQKCLNCKSYNTRQTRG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0437 315 CDD RING-H2_Pirh2-like 205 249 - -
Vvi4g0437 315 SMART ring_2 206 248 IPR001841 -
Vvi4g0437 315 SUPERFAMILY CHY zinc finger-like 67 141 IPR037274 GO:0008270
Vvi4g0437 315 Gene3D - 277 315 - -
Vvi4g0437 315 Pfam Ring finger domain 205 248 IPR001841 -
Vvi4g0437 315 Pfam Zinc-ribbon 253 311 IPR039512 -
Vvi4g0437 315 ProSiteProfiles Zinc finger CTCHY-type profile. 141 205 IPR017921 -
Vvi4g0437 315 ProSiteProfiles Zinc finger CHY-type profile. 63 139 IPR008913 GO:0008270
Vvi4g0437 315 ProSiteProfiles Zinc finger RING-type profile. 206 249 IPR001841 -
Vvi4g0437 315 SUPERFAMILY Zinc hairpin stack 142 199 IPR037275 -
Vvi4g0437 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 251 IPR013083 -
Vvi4g0437 315 Pfam CHY zinc finger 70 151 IPR008913 GO:0008270
Vvi4g0437 315 SUPERFAMILY RING/U-box 205 254 - -
Vvi4g0437 315 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 33 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0437 Vvi-Chr4 3856007 3861408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0437 68 311 C2H2 Transcription Factor Family AT3G18290 40.800 9.19e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0437 K10144 - vvi:100252623 687.182