Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0431 ATGGGGAATAAGGTGAAGGAGGAAGAGAAAATTGAGAGGACAATTCGGGGCCTTTTGAAGCTTGCTGAGAACCGGAGATGTATCAATTGCAACAGTTTGGGGCCACAATACGTTTGCACGACTTTCTTGACATTTGTTTGCACAAACTGCAGTGGAATTCATCGAGAGTTCACACATCGGATAAAATCTGTATCGATGGCTAAATTTACTACAGAAGAAGTCACTGCTCTTCAAGCAGGGGGAAATGAGCGAGCAAGGGAAATTTATCTCAAAGATTGGGATCCACAACGACATTCCCTCCCTGACAGCAGTAACCTTCACAAACTCCGGGAATTTATTAAGCATGTCTATGTGGATAGAAAATATACTGGCGAGAGGAATGTCGACAAGCTCCCAATGGTGAAAGTGGGTAACAGTGGATCTAGGAACTCAAGTCTTGAGGTTGCATGTGAATGGCGTAACAGTGAAAGATCTAGTCCTAGCGGAAGAAGTGGTGACAATAGTATCAGATATTACTACGATGAAAGAAGAAGCCCTCGATTTTCCCACGAACATTCAAGATCTGGTGGTTTCAGGAGAAATCCTGTCCGTTTTGAGGTAGTTGATGACAGGGTTCGAGATGATAGACTTGGAGGTGGCAGACGAACTGAAAGCAACAGATTTTCTAATGGAGAATCAAGGCAAATTAGTAGATTGCCTGACTCTCAAAGGAAGGTGGATGTATCCAGTTCCCCAGAGGTACGCCCGGTAAGCAATATTCTGGGGGAAAATGTTTCTCCTCTACATGCGGGTGAACTTCCTAATACAAATGACAAGAAGGATGCCAATGCCTCAGCTCATCCAAAGGTCAGTTACATGCTGAACCATGCTGGGAATTTGTTTTATGTATGA 891 0.4377 MGNKVKEEEKIERTIRGLLKLAENRRCINCNSLGPQYVCTTFLTFVCTNCSGIHREFTHRIKSVSMAKFTTEEVTALQAGGNERAREIYLKDWDPQRHSLPDSSNLHKLREFIKHVYVDRKYTGERNVDKLPMVKVGNSGSRNSSLEVACEWRNSERSSPSGRSGDNSIRYYYDERRSPRFSHEHSRSGGFRRNPVRFEVVDDRVRDDRLGGGRRTESNRFSNGESRQISRLPDSQRKVDVSSSPEVRPVSNILGENVSPLHAGELPNTNDKKDANASAHPKVSYMLNHAGNLFYV* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0431 296 PANTHER ARFGAP/RECO-RELATED 1 281 IPR044820 GO:0005096
Vvi4g0431 296 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vvi4g0431 296 MobiDBLite consensus disorder prediction 208 277 - -
Vvi4g0431 296 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Vvi4g0431 296 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vvi4g0431 296 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vvi4g0431 296 CDD ArfGap_AGFG 12 122 - -
Vvi4g0431 296 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Vvi4g0431 296 MobiDBLite consensus disorder prediction 216 250 - -
Vvi4g0431 296 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Vvi4g0431 296 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vvi4g0431 296 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vvi4g0431 296 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0431 Vvi-Chr4 3814650 3816956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0431 12 122 C2H2 Transcription Factor Family AT4G21160 30.769 1.50e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0431 - - vvi:100853277 561.607