Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0427 ATGACTGAACAGTTTGTGAAGATGAGCAACAGGAACCAGGAGCAGAGGAGACATTCCAGTCAGACAACAGGCACTCAGCCATCTAGGAAGCAGCCAAGAAAGGGAGGGAACCCAGTCCGGCTTCCATCAGCTGCTGGGCTTACTCAAGATGAGGAGTCTTCAAACACAAGGATATGTAAAAACTCAGCTTGTCGAGCTGTGCTATCTTTAGATGACATATTCTGCAAGAGGTGCTCTTGCTGTATCTGCCACTCATTTGATGACAACAAGGACCCTAGCCTATGGTTAGTCTGCACATCTGAGTTTGATAAGGGTGACACTTGTGGGTTGTCTTGCCACATTGAATGTGCAATTCTAAGGCAGAAAGTTGGGGTGGTTGATCTGGGGCAATTGATGCAGCTAGATGGGACCTACTGCTGTGCTTCTTGTGGAAAAGTCACAGAAATTCTTGGATGTTGGAAGAAGCAGTTTATCATAGCGAAGGAAGCTAGGCGGGTTGATGTTCTCTGCTATAGGATATCATTGTGTTATAGGCTTTTGGATGGGACATCCAGATTTAAAGAGCTACATAAAGTTGTAAGTGATGCCAAGGCCAAGCTCGAAACAGAGGTGGGTCCAATTAGTGGGGATTCTGCCAAAATGGCACGTGGCATCGTGAGCAGACTCTCAGTTGCTGCAGATGTGCAGAATCTCTGCTCTCTTGCTATTGAGAAAGTAGATGCAAGGCTCAACTCCATTTCTACTGCTAACTTCAATCACCGAGAAAACTCACTTGGTGCTGCTTTCATATTCCTATTTGAAGAAGTAACAGCTTCTTCTCTTGTTCTTGTTTTGGATGAACCAGATGCTTCACCTTCTGATGCAGTTAAAGGGTACATGCTCTGGTATTGCCCAAGCAGGGAAGAACCATCCTCCAAGGAGCCTATGCGCATCTTCCCAAGGACTCAGAAAAGGGTTCTAATATCAAATTTGCAACCTGGCATTGAGTATCTTTTCCGGATAATTCCTTATACTGATTCTGGCAGCTTGGGTCATTTTGAGGCAAAGTGTTTCACTAGGAATGTGGAGATAAACCACAAGAATTTTGAATCTGAAGTCGTCGTTCCACAAAATGAAATTAGTCCTGATAATGAAAGACTAGATACCAGGAATGAAACAGTGCCAAGGACTTCCAGTTTTAAGGTCCAGGACCTAGGAAAGGTTCTCTACCTTACTTCAGCAGAAGAACAAGGCTCTCTGGAGGGATTATGCAGTGCTGATGTGGAAGAATGCAGTGGTGGGAGCAGTGCAATGAGATATGAAACCCCAGAAGATGAAAAACCAATGCCAAATTCGCGTGAGCTTGACTTAAATGTTGTTTCTGTGCCTGATTTGAATGCAGAACTAACACCACCACTAGAGTCCTCCAGAGATGAAGACAATGAGTGCACCTTGGAGCAGGTGGTTGAAGCTGAGGATGATGCAGTATCACATGGCTTGGAAAAGAATGATCAATCAAGATCAAGTGGTAGCCACGACTCACAAACTTGCAAAATCAGGGCAATCAGAGAAGTTCCTGCTGTTGAATCCAGAACAGAGTTATGCAGGAAACAGACTCTGAGCTCAAAGAGTGAGGCATATGATTGCGTTAGCACTCTAATTAATGGTTCCCCATTGCAAGTCTGTGCTGGATCAGGCCATTTGGACAGGAGCTATGAGTATTGTGTGAAGATCATTCGATGGCTAGAGTGTGAAGGGCACATAGGACAGGAATTTAGGATGAAGTTCTTAACTTGGTTTAGCTTGAGATCAACCGAGCAGGAGCGGAGGGTTGTGCATGCATTTATCCAAACCCTAATCGAAGACCCAAGTAGCTTGGCAGGCCAGTTGATTGATTCATTCTCAGACATTGTGAAAAGCAAGAGGACCCGTAATGGTTTCTGCAGTGAACTATGGCATTGA 1941 0.4472 MTEQFVKMSNRNQEQRRHSSQTTGTQPSRKQPRKGGNPVRLPSAAGLTQDEESSNTRICKNSACRAVLSLDDIFCKRCSCCICHSFDDNKDPSLWLVCTSEFDKGDTCGLSCHIECAILRQKVGVVDLGQLMQLDGTYCCASCGKVTEILGCWKKQFIIAKEARRVDVLCYRISLCYRLLDGTSRFKELHKVVSDAKAKLETEVGPISGDSAKMARGIVSRLSVAADVQNLCSLAIEKVDARLNSISTANFNHRENSLGAAFIFLFEEVTASSLVLVLDEPDASPSDAVKGYMLWYCPSREEPSSKEPMRIFPRTQKRVLISNLQPGIEYLFRIIPYTDSGSLGHFEAKCFTRNVEINHKNFESEVVVPQNEISPDNERLDTRNETVPRTSSFKVQDLGKVLYLTSAEEQGSLEGLCSADVEECSGGSSAMRYETPEDEKPMPNSRELDLNVVSVPDLNAELTPPLESSRDEDNECTLEQVVEAEDDAVSHGLEKNDQSRSSGSHDSQTCKIRAIREVPAVESRTELCRKQTLSSKSEAYDCVSTLINGSPLQVCAGSGHLDRSYEYCVKIIRWLECEGHIGQEFRMKFLTWFSLRSTEQERRVVHAFIQTLIEDPSSLAGQLIDSFSDIVKSKRTRNGFCSELWH* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0427 646 SUPERFAMILY Fibronectin type III 266 341 IPR036116 GO:0005515
Vvi4g0427 646 CDD FN3 266 341 IPR003961 GO:0005515
Vvi4g0427 646 ProSiteProfiles Fibronectin type-III domain profile. 260 357 IPR003961 GO:0005515
Vvi4g0427 646 MobiDBLite consensus disorder prediction 1 49 - -
Vvi4g0427 646 Pfam PHD - plant homeodomain finger protein 59 177 IPR032881 -
Vvi4g0427 646 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 646 IPR044514 GO:0010048|GO:0040029
Vvi4g0427 646 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g0427 646 Pfam Fibronectin type III domain 266 343 IPR003961 GO:0005515
Vvi4g0427 646 MobiDBLite consensus disorder prediction 426 445 - -
Vvi4g0427 646 Gene3D Immunoglobulins 263 355 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0427 Vvi-Chr4 3778401 3782096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0427 58 639 PHD Gene Family AT3G24440 45.134 2.49e-157 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0427 - - vvi:100259403 1306.97