Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0424 ATGCCTGTGAAACTGCAGCAATCATCATTTCGAGATCGGACGCCAGAGTTTCTTAATGTGGCGGAGAGGCTGAAGAAGTCATTCTCGTCAACTCAGAATGGGGCAAATAGTGCTTCAAAAGCAGAGGAACAGCGCTTTGCAGTTGCAATGCAGTCAGAGTTTAACAAAAGAGCTTCAAAGATTGGGTTTGGAATACATCAAACATCGCAGAAGCTTTCAAAGCTTGCAAAATTGGCTAAAAGGACTTCAGTTTTTGATGATCCCACCATGGAAATCCAAGAGCTGACTGCAGTTATAAAGCAGGATATTACTGCTCTGAACTCAGCAGTAGTAGATCTTCAGCTTCTCAGCAACTCCAGAAATGAAAGTGGGAATATCTCCAGTGACACCACCAGTCATTCGACCACAGTTGTTGATGACCTGAAAAACCGCTTGATGAGCGCCACAAAGGAGTTCAAAGAAGTTCTCACTATGCGAACAGAGAACTTGAAGGTTCATGAGAACAGAAGACAGTTGTTTTCCACTGCTTCAAAAGATTCTACAAATCCTTTTGTTCGTCAACGTCCATTGGCTACCAGGTCTGCTGCTAGTGCCTCAGCAAGCCCTCCTCCATGGGCTAATGGATCCCCATCTTCATCCCAGTTATTTCCCAGGAAGCAGATTGATGGAGAGAGTCAGCCACTGATACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGTTGGTTCCATTACAAGACAGTTACATGCAGAGCAGAGCGGAAGCTCTTCAAAATGTGGAGTCTACAATTCATGAGTTGAGCAGCATCTTCAACCAGCTGGCAACACTGGTTTCTCAGCAAGGCGAACTTGCTATCAGAATCGATGAGAACATGGATGACACGCTGGCGAACGTGGAAGGGGCGCAAGGGGCTTTGCTCAAGTATCTCCACAGCATATCATCTAATAGGTGGTTGATGATCAAAATATTCTTTGTATTGATTTTTTTCCTCATGGTTTTCCTATTTTTTGTGGCATAA 1023 0.4477 MPVKLQQSSFRDRTPEFLNVAERLKKSFSSTQNGANSASKAEEQRFAVAMQSEFNKRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLSNSRNESGNISSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSTASKDSTNPFVRQRPLATRSAASASASPPPWANGSPSSSQLFPRKQIDGESQPLIQQQQQQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGELAIRIDENMDDTLANVEGAQGALLKYLHSISSNRWLMIKIFFVLIFFLMVFLFFVA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0424 340 SUPERFAMILY t-snare proteins 51 303 IPR010989 GO:0016020|GO:0016192
Vvi4g0424 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi4g0424 340 SMART tSNARE_6 243 310 IPR000727 -
Vvi4g0424 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vvi4g0424 340 CDD SNARE_syntaxin5 251 329 - -
Vvi4g0424 340 PANTHER SYNTAXIN 51 332 IPR045242 -
Vvi4g0424 340 Pfam SNARE domain 285 336 IPR000727 -
Vvi4g0424 340 MobiDBLite consensus disorder prediction 190 218 - -
Vvi4g0424 340 MobiDBLite consensus disorder prediction 225 244 - -
Vvi4g0424 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Vvi4g0424 340 Gene3D - 48 303 - -
Vvi4g0424 340 FunFam Syntaxin-32 like 48 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0424 Vvi-Chr4 3752883 3756544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0424 1 340 SNARE and Associated Proteins AT3G24350 65.574 4.95e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0424 K08490 - vvi:100257761 560.066