Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0419 ATGGGGGTGGATTATTACAACGTATTGAAGGTAGGAAAGAATGCAACGGATGAAGATCTCAAGAAGTCATACAGAAGGTTGGCTATGAAATGGCATCCTGATAAGAATCCCAATAACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAAGGGTTGAAAGACATGCCACCTCCTGGCAGTGGTGGTGGATTCCCCTTTGGGAGTGGGGATGCAAACGGGTTTTTTCCTCGGAATGCTGAGGACATTTTTGCTGAATTCTTTGGGAGTAATCCTTTCGGATTTGGATCAGCAGCACATGGAAGGTCCATGAGATTCCAGTCAGAAGGAGGAGGCACTTTTGGGGGATTTGGTGGTGGTGAAAGTGCTTTCCGTTCGTATACTGAGGGCACCGGTGGTAGTGTCAGGCTTAGGAAACCGCCACCAGTGGAGAACAAATTGCCATGCACCCTTGCAGAGCTGTACACAGGATCAACAAGGAAAATGAAGATATCCAGGACTGTTGTCGATGCTAATGGTCGGTTAGTGCCAGAAACAGAAATATTGATCATTGAAGTGAAGCCCGGGTGGAAGAAAGGAACAAAAGTCACTTTTCAAGATAAAGGGAATGAACAGCTGAACCAGCTAGCAGCAGACCTTGTATTTGTGATTGATGAAAAGCCTGATAATGTTTTCAAGAGAGACGGCAACGACCTAGTCATGAACTATAAGGTATCACTAGCAGAGGCACTTGCAGGGACTGCAGTAACCCTCACTACACTGGATGGCCGTAATCTAACAATCCCAGTTACAGATATTGTGTCTCCTGGTTATGAACTTGTTGTTGCTAAGGAGGGAATGCCAATTGTGAAGGAACCAGGTAACAGGGGTGATCTGAGGATCAAATTCGAAGTGAAGTTCCCGACAAGATTGACTCCTGAGCAACGTGCAGGACTCCGACGTGCCTTGGGAGGTTGA 1020 0.4627 MGVDYYNVLKVGKNATDEDLKKSYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKVVYDQHGEEGLKDMPPPGSGGGFPFGSGDANGFFPRNAEDIFAEFFGSNPFGFGSAAHGRSMRFQSEGGGTFGGFGGGESAFRSYTEGTGGSVRLRKPPPVENKLPCTLAELYTGSTRKMKISRTVVDANGRLVPETEILIIEVKPGWKKGTKVTFQDKGNEQLNQLAADLVFVIDEKPDNVFKRDGNDLVMNYKVSLAEALAGTAVTLTTLDGRNLTIPVTDIVSPGYELVVAKEGMPIVKEPGNRGDLRIKFEVKFPTRLTPEQRAGLRRALGG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0419 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vvi4g0419 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vvi4g0419 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vvi4g0419 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vvi4g0419 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vvi4g0419 339 FunFam DnaJ subfamily B member 13 3 119 - -
Vvi4g0419 339 CDD DnaJ 4 59 IPR001623 -
Vvi4g0419 339 Pfam DnaJ C terminal domain 165 322 IPR002939 -
Vvi4g0419 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Vvi4g0419 339 FunFam DNAJ heat shock family protein 242 337 - -
Vvi4g0419 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vvi4g0419 339 Gene3D - 163 241 - -
Vvi4g0419 339 Pfam DnaJ domain 4 67 IPR001623 -
Vvi4g0419 339 Gene3D DnaJ domain 3 121 IPR036869 -
Vvi4g0419 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Vvi4g0419 339 FunFam Dnaj homolog subfamily b member 160 241 - -
Vvi4g0419 339 SMART dnaj_3 3 62 IPR001623 -
Vvi4g0419 339 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
Vvi4g0419 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 242 IPR008971 GO:0006457|GO:0051082
Vvi4g0419 339 CDD DnaJ_C 162 325 - -
Vvi4g0419 339 Gene3D - 242 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0419 Vvi-Chr4 3681080 3684446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0419 5 69 C2H2 Transcription Factor Family AT1G74250 42.029 5.95e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0419 K09510 - vvi:100268033 626.32