Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0417 ATGGCCATTCCCTCACTGGAACTACATAGTAAAAGTCAAAGTGATATTTACCCATTATTAATGGAGCAACCAGGAAATCAAATTGATACTGAGCACATCATTGACATAACAAGGAGTGGTGATGCTTCCTCATCTAATTCATCCAATGATGGACCTTCAACTAGCTTGGACCAGTTGCAGCATGACGATAGACCCGCAAGTAGTGCGAGGGTCCCTATTTCTCAACCTTCATTTTCTTCCTCCAATGTATCAAACTCCAGAAATTCCTTCAGAAGAAGAGCAGATGCCCGCCGTCGTAGGAGTCCATTGAATTCTGGGTTATGGATTTCTATCGAACTAGCTCTGACTGTGAGTCAGATTATTGCATCTGTTGTTGTTTTATCTTTGTCACGGCATGAGCACCCACATGCTCCATTGTTTACATGGATTGTGGGATATGCATCTGGATGTGTTGCAACCCTCCCTATTCTCTATTGGCGTTTTCGTCATCGCAACCAGGGTCATGAGCAAGAGTCAGCTCAATCGCGGCAGGTTTCTTTTCACAGCAACCTCCCTGGAGGACCTACCTTTTCCCTTTCAGTTACTGGCACCTCAGAAGAAGAAGATCGCCAACCCTCTGTTCCAGCCACGAGAAACAGTCAAAGTGTAAGGAGATTAAGTGCAAGACTAAAGGTTCTGGTGGAATACTTCAAGATGGCTCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTAGGAAACGTGTGGATCTTTGGAGGGCACTCCTCATCCTCTGAGGCTCCCAACTTGTACAGGTTATGTATAGTCTTTCTTACCTTTAGCTGTATCGGATATGCCATGCCGTTCATTCTATGTGCTACAATCTGCTGCTGCCTCCCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGATCTGACACAGACTAGAGGAGCCACATCAGAATCAATAAATGCTCTTCCAACCTACAAGTTCAAGCTGAAAAAAAATAGAAATGGCGATGATAGAGAAGGCAATTCAGGTGCGGGCGAAGGTGGGGTTGTAGCAGCTGGAACAGAAAGGGAGCGGGTGATCTCTGGAGAAGATGCAGTATGCTGTATTTGCTTGGCAAAGTATGCAAACAACGACGAGCTTCGGGAGCTGCCATGTTCTCACTTCTTCCACAAGGAGTGTGTGGATAAATGGCTGAAGATCAATGCTCTATGTCCCCTCTGCAAGCGTGAGGTCGGTGAGAGCTTTTTAGGTTCACTCTCAGGGTTAAGTATCAACTAG 1266 0.455 MAIPSLELHSKSQSDIYPLLMEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQHDDRPASSARVPISQPSFSSSNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQIIASVVVLSLSRHEHPHAPLFTWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSFHSNLPGGPTFSLSVTGTSEEEDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKREVGESFLGSLSGLSIN* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0417 421 MobiDBLite consensus disorder prediction 39 97 - -
Vvi4g0417 421 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Vvi4g0417 421 SMART ringv_2 362 404 IPR011016 GO:0008270
Vvi4g0417 421 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 407 - -
Vvi4g0417 421 Pfam Ring finger domain 363 404 IPR001841 -
Vvi4g0417 421 SMART ring_2 363 403 IPR001841 -
Vvi4g0417 421 FunFam E3 ubiquitin-protein ligase 346 412 - -
Vvi4g0417 421 MobiDBLite consensus disorder prediction 39 62 - -
Vvi4g0417 421 SUPERFAMILY RING/U-box 354 409 - -
Vvi4g0417 421 MobiDBLite consensus disorder prediction 70 89 - -
Vvi4g0417 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 410 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0417 Vvi-Chr4 3662685 3668731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0417 14 410 C3H Transcription Factor Family AT1G80400 56.608 1.13e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0417 - - vvi:100245718 768.074