Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0415 ATGAACAAAGAAAATATTATTTCTGCTAAAATTGAAGAGCCAACTGTTCGGATCACGAGAGCACGAGCGAAAGCTGCTACCAAATCAGGGGGGTTACTCCCCCCTAAACCTCCCATTAAACTGGACCAAATGCAGGTGGTTCGAACGAATTCTAAAAGGGCAGCGTCTGATGAGAACAAGCCCTCTGCCACTGCCAATGCTGGCCTTCAGCATAAGAGAAGGGCAGCGCTAAAGGATGTCACCAATGTCGTCAGTGAAAATTCATACATGAATTGCATTAGTACAACTAAAGTTGAGATTAGCAAGCGAGCTAAAAGAGGTCCTTCAAATAAGAGTTCAAAGGTGGCTCTGACTGTTTTGGTAGAAACTCCGCAGGTTCAAGAGGATGCCAAAACAAAGGTAACTGGAGAAACATCCAACATAAGGACAGTGGAAACACAAGATAGTACTTTACTGGTTAACTTGGAAGAGGATGAATTCATTCAACATACATTTAGTAGCTTAAGAACAAGTGATGTAGCTGATCCGACTCAATTAGAAGAGACATCCATAAAACCTGCTCAACACCAAATTCTTTCTGAGGAAGAAGAAGATAATCTTTTCAAGGCACAGGGATCCCCAAATGGTCCATGCATTGCAGATATTGATTCAGACCACAAGGATCCTCAAATGTGCAGCTTGTATGCCTCTGACATCTATGATAATTTTCTTTGTAGAGAGCTTGACCGAAGACCTTCTGCTAATTTTATGGACTCAGTCCAACGAGACATCACTCCAAACATGCGAGGAATTCTGGTTGATTGGCTTGTAGAGGTTTCAGAAGAATATAAGCTGGTTCCAGATACACTTTACCTCACAGTTAATCTTATCGATCGATTTCTATCCAAAAATTACATTGAAAAGCAAAGACTCCAACTGCTTGGTGTTACTTGCATGCTAATTGCCTCAAAGTATGAAGAAATATGTGCACCACATGTGGAAGAGTTCTGCTTCATCACCGATAACACCTACACAAGAGAAGAGGTATTGAAAATGGAGAGTCAAGTTTTGAATTTTCTGGGCTTTCAACTATCTGTTCCCACCACAAAAAAGTTTCTCAGGAGGTTCATTCAGGCAGCACAGACCTCTTACAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCGAATTATATAGCAGAGCTAACTCTTGTTGACTACAGCTTCCTAAAGTACCTACACTCCCTGATTGCTGCATCTGCCGTATTTCTTGCCAGATGGACACTCAATCAGTCAGACCACCCTTGGAATGCAACTCTAGAGCACTACACCACTTACAAGGCATCAGACCTGAAGAATGTAGTTCTCGCAATGCAAGATTTGCAACTCAACACTAATGGTTCCTCTCTGAATGCCATACGTGACAAGTATAAGCTAAAAAAGTTCAAGAGCGTGGCCACTCTCTCCTCCGAAAAAGCAGTGCAGGAACTCTTCCAAGATTAA 1479 0.4206 MNKENIISAKIEEPTVRITRARAKAATKSGGLLPPKPPIKLDQMQVVRTNSKRAASDENKPSATANAGLQHKRRAALKDVTNVVSENSYMNCISTTKVEISKRAKRGPSNKSSKVALTVLVETPQVQEDAKTKVTGETSNIRTVETQDSTLLVNLEEDEFIQHTFSSLRTSDVADPTQLEETSIKPAQHQILSEEEEDNLFKAQGSPNGPCIADIDSDHKDPQMCSLYASDIYDNFLCRELDRRPSANFMDSVQRDITPNMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRFLSKNYIEKQRLQLLGVTCMLIASKYEEICAPHVEEFCFITDNTYTREEVLKMESQVLNFLGFQLSVPTTKKFLRRFIQAAQTSYKVPCVELEFLANYIAELTLVDYSFLKYLHSLIAASAVFLARWTLNQSDHPWNATLEHYTTYKASDLKNVVLAMQDLQLNTNGSSLNAIRDKYKLKKFKSVATLSSEKAVQELFQD* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0415 492 CDD CYCLIN_AtCycA-like_rpt2 360 474 - -
Vvi4g0415 492 MobiDBLite consensus disorder prediction 48 66 - -
Vvi4g0415 492 Pfam Cyclin, N-terminal domain 231 358 IPR006671 -
Vvi4g0415 492 PIRSF Cyclin_A_B_D_E 39 491 IPR046965 GO:0016538|GO:0044772
Vvi4g0415 492 SMART Cyclin_C_2 360 483 IPR004367 -
Vvi4g0415 492 SUPERFAMILY Cyclin-like 220 357 IPR036915 -
Vvi4g0415 492 FunFam Mitotic cyclin 6 245 345 - -
Vvi4g0415 492 Gene3D - 245 358 - -
Vvi4g0415 492 Pfam Cyclin, C-terminal domain 360 482 IPR004367 -
Vvi4g0415 492 FunFam Cyclin A1 347 479 - -
Vvi4g0415 492 PANTHER CYCLINS 188 471 IPR039361 -
Vvi4g0415 492 ProSitePatterns Cyclins signature. 262 293 IPR006671 -
Vvi4g0415 492 MobiDBLite consensus disorder prediction 48 69 - -
Vvi4g0415 492 SMART cyclin_7 267 351 IPR013763 -
Vvi4g0415 492 SMART cyclin_7 364 452 IPR013763 -
Vvi4g0415 492 SUPERFAMILY Cyclin-like 359 482 IPR036915 -
Vvi4g0415 492 Gene3D - 231 479 - -
Vvi4g0415 492 CDD CYCLIN_AtCycA_like_rpt1 221 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0415 Vvi-Chr4 3632037 3637487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0415 3 490 Core Cell Cycle Gene Families AT5G25380 53.106 9.12e-163 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0415 K06627 - vvi:100245617 949.503