Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0409 ATGGTGAGCATGGGATTGGGATCAGTGGTGGAGAAGGAGAGAAGCAGGAAACGACGTCGTCTCGCCTGGGATGTGGCTCCATCTCAGCAACGAGAGGCTGATCGGCTGCCCACCGCGGTGAATCATGAAAGCTTGAGACGCCAATCGCCGCCGAGGAGGGATGACGATCGTGAAGGCCATTACGTCTTCGGTCTTGGTGAAAATCTTACTCCAAGATATAAAATACTCAGCAAGATGGGTGAAGGCACTTTTGGCCGGGTTTTGGAATGTTGGGATCGTGATACACGGGAATATGTTGCAATCAAGGTAGTTCGAAGCATAAGCAAGTACCGTGATGCAGCAATGGTTGAAATTGGTGTGCTTCAACAACTTGTTAAGAATGATAAATGCAGATTGCGATGTGTGCAGATTCAGCACTGGTTTGATTACCGGAATCACATATGCATAGTGTTTGAGAAGCTTGGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGAGGTTTTCTTCCGATGAAACTCACTTCAGGTGCTTGCCAAAGTCGAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAGTGGAACTTTGTGTGGGTGAAGCATTATTTCAGACACATGAGAACTTGGAGCATTTGGCCATGATGGAGAGGGTGTTGGGACCTCTGCCAGAGCATATGATTCGGAGGGCAAGCCGAAGTGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGGATATGGTATTACAGCATGTGGGGAGCTCAAGATCATCTCTTACTGACTTGCTTTATGGTTTATTGAAGTTTGATCCAGCGCAGCGGCTTACAGCCCGACAAGCACTGAACCATCCCTTCTTTAAGAATCCGACCTGA 1209 0.4516 MVSMGLGSVVEKERSRKRRRLAWDVAPSQQREADRLPTAVNHESLRRQSPPRRDDDREGHYVFGLGENLTPRYKILSKMGEGTFGRVLECWDRDTREYVAIKVVRSISKYRDAAMVEIGVLQQLVKNDKCRLRCVQIQHWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYVHDLCLIHTDLKPENILLVSSECIKLPSSKRFSSDETHFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEVILGLGWSYPCDLWSVGCILVELCVGEALFQTHENLEHLAMMERVLGPLPEHMIRRASRSVEKYFRGGSRLNWPEGAVSRESIRAVKKLDRLKDMVLQHVGSSRSSLTDLLYGLLKFDPAQRLTARQALNHPFFKNPT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0409 402 Gene3D Transferase(Phosphotransferase) domain 1 152 401 - -
Vvi4g0409 402 FunFam Serine/threonine-protein kinase AFC2 149 398 - -
Vvi4g0409 402 MobiDBLite consensus disorder prediction 1 58 - -
Vvi4g0409 402 CDD PKc_CLK 60 398 - -
Vvi4g0409 402 MobiDBLite consensus disorder prediction 36 58 - -
Vvi4g0409 402 SUPERFAMILY Protein kinase-like (PK-like) 60 400 IPR011009 -
Vvi4g0409 402 FunFam Serine/threonine-protein kinase AFC2 60 153 - -
Vvi4g0409 402 MobiDBLite consensus disorder prediction 10 25 - -
Vvi4g0409 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi4g0409 402 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Vvi4g0409 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 25 400 - -
Vvi4g0409 402 Pfam Protein kinase domain 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0409 402 SMART serkin_6 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0409 402 ProSiteProfiles Protein kinase domain profile. 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0409 Vvi-Chr4 3580660 3584879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0409 72 400 Core Cell Cycle Gene Families AT3G54180 28.613 1.80e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vvi4g0409 Pkinase 6.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0409 K08287 - vvi:100261084 812.372