Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0376 ATGGGTAAGGGAACAGGAAGCTTCGGAAAGAGGAGGAACAAGACCCACACGCTCTGTGTCCGATGTGGACGCAGAAGCTTTCACCTTCAGAAGAGCCGATGCGCTGCTTGTGGATTTCCTTCTAGCCGGATCCGAAAATATAATTGGAGTGTGAAGGCAATCCGCAGGAAGACCACTGGAACAGGGCGAATGAGGTATCTCCGTCATGTTCCATGTAGGTTTAAGAGTAACTTCAGAGAAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGCAGCAGCCTCTTGA 285 0.5053 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPSSRIRKYNWSVKAIRRKTTGTGRMRYLRHVPCRFKSNFREGTEAAPRKKGAAAS* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0376 94 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vvi4g0376 94 PANTHER 60S RIBOSOMAL PROTEIN L37 1 93 - -
Vvi4g0376 94 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vvi4g0376 94 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vvi4g0376 94 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vvi4g0376 94 FunFam Ribosomal protein L37 1 88 - -
Vvi4g0376 94 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0376 Vvi-Chr4 3229212 3231208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0376 1 94 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 80.851 2.11e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0376 K02922 - vvi:100247371 200.675