Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0365 ATGGAATGTGCTGAGGAAACAAATTCTTCATTCGTTGGGGTCAGTGATGGTTTTCAGAAAATGCAACCTCTTTCTGGGAGGACCAGGGGTCCAACGAGACGTTCCACAACAGGAAAATGGACGGTTGAAGAGGATGACATGCTGCGTGAGGCTGTTCAGTGTTATAAAGGAAAGAATTGGAAAAAAATAGTGGAATGTTTAAAGGATCGAACTGTGATACAGTGCCAACATAGGTGGCAGAAGGTTTTGAATCCAGAAATTGTCAAAGGTTCTTGGACAAAAGAGGTGAAGCATTATGGGTGTTTCTGGTTCCCATGTCAATTCCTTACATCAGAGGATGAAAAAATGATGAAATTGGTGAAAATATATGGACCAAAGAAATGGTCCAACATTGCCAAGCATTTACCTGGACGCATTGGAAAACAATGCCGGGAAAGGTGGCATAACCATCTGAATCCGGCCATCAACAAGGAGGCATGGACTGAGGAAGAGGACTTGGCTTTAATGCATGCTCATCAGATACATGGGAACAAGTGGGCAGAATTAACAAAGTTTTTGCCTGGAAGGACAGATAATGCAATTAAAAATCATTGGAATTGCTCAGTGAAAAAGAAAATGGACAAATACATGGCATCAGGTCTACTTGCACAGTTCAAAAGCCTGCCTGATGTCAATTATCAAAACCACTCACTGCATTCATTGTCTTTGGGAGCGCAAGATAGCAATGGAAATGACAGTGGTGTAGAACATGGAAAAGAAACAGAGGAAATTACCGACTATGCTAAAACTTCAACTGTTATCGACTACTCTCAATCTGCAAATAGGACAGCTAATGCAGTTCCATCTACAAGAGAAGAATTCCAAATGAATGAGGAGTCAATCCAAGGGAAGGGGCAGCATATTAGTCTAGTATCAGATTCCAACCGATGTCACAACTCTGCTGAAGGTGTCAGTTTTTCCCTTCCAGAAATGCCTGACCAACCCAGATTCTCCAAGGTCCTTGGGAAAAATTTATCATATGATGCTGGAACATTTGAAAGTAGGGATTGGCAGTTTGCTTTGCAAGAATTAACTAATATTTCTTCACTTGATCTGGGCCAGGACTTGATCAAGGTATCAAAACATTGTATATGTGCTAGTGGAAACCATGAAATGCTACCTGGCCCAGTACTAAACGCTGTGGGGTTAACTTCTAGTGTAATGCAAAATGTGGAGGCTTGTTCTGATCAGCCTGTAAACATGCTGATTTCTAAATGTGATTGCTGCCCAGTCATTTTCCCTGAGGCAGAGAATCATGAATGTCTTTCCTTCAGAGATCATTTAGACTGCTCAGCTATCTGTAATTTGGATGGGTGTACAGATTCATTACATTATCAATCCTCTAACTCTCAAAGCTCTGAAATTTCAGAAACCTTAGCTTCACAATCAATTCATCCTCTGAGATCTGAACTGTTGGGAACTTCAAGCTGTCAAACTTCTCTGCCTGTTGCACTTCCTGATGATGATAGTACACCAATATTTGGTAGTGAACCCAATCATTTAAATGATGCTTCACTTGGAACTACAGAACAGGAGCCTGTTACATGTTCACAGGCTGGTTTTATCCATACCAATGACTCTGCTAGTTCCCCTTGTGATAATGGTACAGATAGCTTTGGTCTGCATATCCAACCAGACAACAAGGAATCTTCAAGATCAGTTCATTTGGTTGCTTTTGTCTCAGGGCCATCAGATATCATGAAAAATTTTCTTGCCACAGATGAAAAACCAATCATGCATACTGAACAAATAGATTCAGGAGACATATTTAATGAGACTTGTTGTTTTCCAAGCTTGGATGTTCCTTTCTTCAGCTGCGGCCTTATAGAATCTGATAGCAGTCACCAGCAAGAATATAGTCCTCTTGGTGTCCGGAAACTGATGATGTCTCCTATGGACTGCTTTTCTCCACTTGGGTTATGGGATTCACCATCTCAGGATGTCAGTCATGAAACTGATCTGAAGAATGCCGCCAAAACCTTTGCATCCTCGCCACACATTTTGAAGAAGCGACACCATGAGTTGTTGACACCTTCATCACAAAAAAGATGTGAAAAAAAACTTGGGAATGCCATGAATCATGGGTTATATTGCACAAATAGCTTGACAAGAGATTTTTCTTGTTTAGATTTGATGCTTGGTGAGAATGGTGACAAAGCATCTTTCGTTTCTCCAAAAAATATCCAGAAAAAGAACTCCAGACCTTGCATGGAAGACAAAGAAAATTTGAGTTGTGCACCTGAAAGAAAAAAAGAATGGAGAAATGATGCTGCACTTTCCAACCATGCAATTCCAGGGATGAACTTTGATCGAAGTTGTCCCTCAGACAAGATAGAGAAAAGTTCCAATGTTCTTGCTGCTGAGGCTAAAGTTGATGCTGATGCTGCTGTCAAAGTTGTGAAACAATCTTCTGGAATCCTTGTTGAAGACAAGAATGACCTTTCATCATTCTCTCCTGATAGAGTTGTACATAAAATGAACAGAGTTCTATGTCCTAGTGCTAGAACTCCAGAAAGTCCAAATTCTAGACAGTTGGAGGAGATTGTTCATTCTGAATTCTTATCTGGAAATTCCTCCTTTTCTGTTATTGTCTCTCCAACTGCTCATGGAAAGAAGAATGGTAGTTGTTCAGGTTCAGTTACACCTGTCAAATCTGCTCCTTCATTAACTCCACTCAAGATCATGTCTGGAAGCTCTGGGAGTGATGCTGGTATTGACAGCATGTTCTGTGAAACTCCTTACAAAAGAGGAAGTGAATCTCCTTCAGTACTGAATTCCCCATGGTTTATTAGCTCTTTCCTTCCTGGCCTAAGAACCGGCACAAACATAACGACTGAGGATATAAGGAATTTTATGAGCCCTGGCGGAGGAAGCTATGATGCCATTGGGCTGATGGGACACTTCAACGATGTAGCTGACTGCCCAAGAAGTTTCGGGGAGTGA 2982 0.4111 MECAEETNSSFVGVSDGFQKMQPLSGRTRGPTRRSTTGKWTVEEDDMLREAVQCYKGKNWKKIVECLKDRTVIQCQHRWQKVLNPEIVKGSWTKEVKHYGCFWFPCQFLTSEDEKMMKLVKIYGPKKWSNIAKHLPGRIGKQCRERWHNHLNPAINKEAWTEEEDLALMHAHQIHGNKWAELTKFLPGRTDNAIKNHWNCSVKKKMDKYMASGLLAQFKSLPDVNYQNHSLHSLSLGAQDSNGNDSGVEHGKETEEITDYAKTSTVIDYSQSANRTANAVPSTREEFQMNEESIQGKGQHISLVSDSNRCHNSAEGVSFSLPEMPDQPRFSKVLGKNLSYDAGTFESRDWQFALQELTNISSLDLGQDLIKVSKHCICASGNHEMLPGPVLNAVGLTSSVMQNVEACSDQPVNMLISKCDCCPVIFPEAENHECLSFRDHLDCSAICNLDGCTDSLHYQSSNSQSSEISETLASQSIHPLRSELLGTSSCQTSLPVALPDDDSTPIFGSEPNHLNDASLGTTEQEPVTCSQAGFIHTNDSASSPCDNGTDSFGLHIQPDNKESSRSVHLVAFVSGPSDIMKNFLATDEKPIMHTEQIDSGDIFNETCCFPSLDVPFFSCGLIESDSSHQQEYSPLGVRKLMMSPMDCFSPLGLWDSPSQDVSHETDLKNAAKTFASSPHILKKRHHELLTPSSQKRCEKKLGNAMNHGLYCTNSLTRDFSCLDLMLGENGDKASFVSPKNIQKKNSRPCMEDKENLSCAPERKKEWRNDAALSNHAIPGMNFDRSCPSDKIEKSSNVLAAEAKVDADAAVKVVKQSSGILVEDKNDLSSFSPDRVVHKMNRVLCPSARTPESPNSRQLEEIVHSEFLSGNSSFSVIVSPTAHGKKNGSCSGSVTPVKSAPSLTPLKIMSGSSGSDAGIDSMFCETPYKRGSESPSVLNSPWFISSFLPGLRTGTNITTEDIRNFMSPGGGSYDAIGLMGHFNDVADCPRSFGE* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0365 993 MobiDBLite consensus disorder prediction 508 522 - -
Vvi4g0365 993 Gene3D - 38 87 - -
Vvi4g0365 993 SMART sant 36 85 IPR001005 -
Vvi4g0365 993 SMART sant 156 204 IPR001005 -
Vvi4g0365 993 SMART sant 104 153 IPR001005 -
Vvi4g0365 993 Gene3D - 158 220 - -
Vvi4g0365 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 206 IPR017930 -
Vvi4g0365 993 SUPERFAMILY Homeodomain-like 36 95 IPR009057 -
Vvi4g0365 993 MobiDBLite consensus disorder prediction 15 37 - -
Vvi4g0365 993 FunFam Transcriptional activator Myb isoform A 106 157 - -
Vvi4g0365 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 155 IPR017930 -
Vvi4g0365 993 CDD SANT 91 151 IPR001005 -
Vvi4g0365 993 Gene3D - 88 157 - -
Vvi4g0365 993 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Vvi4g0365 993 ProSiteProfiles Myb-like domain profile. 111 151 IPR001005 -
Vvi4g0365 993 PANTHER MYB PROTEIN-RELATED 38 95 - -
Vvi4g0365 993 Pfam Myb-like DNA-binding domain 40 96 - -
Vvi4g0365 993 Pfam Myb-like DNA-binding domain 112 166 - -
Vvi4g0365 993 SUPERFAMILY Homeodomain-like 131 208 IPR009057 -
Vvi4g0365 993 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Vvi4g0365 993 CDD SANT 159 199 IPR001005 -
Vvi4g0365 993 FunFam Transcriptional activator Myb isoform A 36 88 - -
Vvi4g0365 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 83 IPR017930 -
Vvi4g0365 993 FunFam Transcription factor MYB3R-2 158 220 - -
Vvi4g0365 993 CDD SANT 39 83 IPR001005 -
Vvi4g0365 993 MobiDBLite consensus disorder prediction 501 522 - -
Vvi4g0365 993 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0365 Vvi-Chr4 3129790 3140711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0365 26 983 MYB Transcription Factor Family AT4G32730 37.564 3.26e-158 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0365 Myb_DNA-bind_6 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0365 - K09420 vvi:100255924 2008.03