Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0364 ATGGAAAGTGACAGGACAATCACTCCTCCCACAGAAGGGGTCAGCGATGGTTTTCAGAAAATGCGACCTCCGCATGGGAGGACTAGTGGTCCTACAAGGCGTTCCACAAAGGGGCAATGGACAGCCGAAGAGGATGAGATTTTATGCAAGGCTGTTCAGCGTTATAAAGGAAAGAACTGGAAAAAAATAGCGGAATGTTTCAAGGATCGGACAGATGTGCAATGCTTGCACAGGTGGCAGAAGGTCTTGAATCCAGAACTTGTCAAAGGTCCATGGTCAAAAGAGGAGGATGAAGTAATAATTGAATTGGTTAACAAATATGGGGCAAAAAAATGGTCCACCATTGCACAACATTTACCTGGGCGTATTGGAAAGCAATGTCGGGAAAGGTGGCACAATCACCTTAATCCTGCCATAAACAAGGAGGCATGGACTCAAGAAGAAGAGTTGGCATTGGTTCGTGCTCATCAGATATATGGAAACAAGTGGGCAGAGTTGACAAAATTCTTGCCGGGAAGGACAGACAATGCCATAAAGAACCACTGGAACAGTTCCGTAAAGAAGAAGTTGGACTCTTATATAGCATCAGGTTTACTTGCACAGTTCCAAGGCCTGCCTCTTGTTGGTCATCGAAACCAATCAATCCATTCATCTTCTTCAAGGATGCAACAGAGTAGTGGAGACGATAGTGGTGCCAAAGGTGGGATAGAAGCAGAGGAAATTTCAGAATGTAGTCAAGGTTCAACTGCGGTAGGTTGCTCCCAATCTGTGAGTGAAATGTCTAATTCTGGTTTACACACAAGAGAGGAATTTCAGATGACTGAAGAATCTGGTCAAGGAAAGGAACAAAGTTCCAGTCCAATATCATGTTCCAAACAATATTACGCATCTATTGAAGAAGTCACTCTCTCAATTCCAGAAATCCCTTGTGAATTGGATTGCCCTTCCAACTACCTTGAGCCAAATTTCCCACATGATGCTAGAATTTCTGGAAGCGTGGAGCGTCAGTTTAATTCAAATGAGCAACCTGCTATTTCTTCTTTTGAACTGGGACAGGCATCATCAGGTTTATCATCACATTTTAATGGTGGCAATGAAAACCGGGACACAGTTTCCATCCCATTACAAACTTCTGTAGGGTTGAATGCTTCTTCTTCCATGGGAAATATGGGTGTGGATTCTGATATACCTGAACACTTACTGATATCTGAAGGCGATTGTTGTGGGTTCAGATTCCAAGAGGCAGGGACTGATGAATATTTTTCCTCTGAAAATCTTACAAGATGCACAAATGCCATTGAATTGGAATGCACAGATCCATTAGTTTGCCAATCATCTGACTTTCAGATCTCTGAAACCTCAGGAACTTCAGCTTCACAGCCATATTACCCTTTAAGGTCTGAGATGTTGGAAGCTTCATGCTGTCAATCTCTTCTGTCTGTTCCTTCAGTTCATCCTGCCGTTGACTGTACGTTTATATTTGGTACTGAAACCAATCAATTAAGTGATTGCTCGCTTCAAACTCAAGGACTTGATGATTTTATCTATACCAATGACTCCACCAATTCTATCTGTCACAATGGTACAGAAAACAAAGACCTTCAAGAGCAACCAGGCCCGGCAAAGGATTCTGTAAACTTAGTTCCTGTAGATTCTTTTGGGTCAGGACCATCAGATATAATGCATACTTGTCCTTCTAGAGAAGGAAAACAACTAGCGCATACTGAACAGCAGGATGAAGGCGCTCTATTTTATGAGCCTCCTCGCTTTCCTAGTTTGGACATTCCTTTTTTTAGTTGTGATCTTATACAGTCTGGTAGTGACATGCAGCAAGAATATAGTCCTCTTGGTATCCGTCAACTGATGATGTCTTCTATGAACTGCTTGACTCCATTTAGGCTGTGGGATTCACCATCTCGAGATGATAGTCCTGATGCTGTGCTGAAAAGTGCAGCCAAAACTTTCACAGGTACACCATCCATTTTGAAGAAACGACACCGTGATTTACTGTCACCTTCACCTTTGTCAGAAAGAAGAAGTGATAAAAAGCTTGAGAGTGACATAAATCAAGGGTTCTTTTGCACATCTAGTTTGACCAAGGAATTTTCTCGCCTAGATGTTATGTTTGATAATAGTGGGACTAACCAGAAAAGTAACTCTGGACCCTTTGATGAAGATAAAGAAAATCTGGGCCATGTTTTTGTGGTGGGAAAAGAAGAGAGGAGAGATGGTCCTCCATCTTCACATAACAGAAATTCAGAGGTAGACTTTGATGGCAGAAATTCTCTGGACAACATCAGACAGGGAAATGTTGATGTTGATGCTAAGACTAAGTTTGATGCTGATGCTGATGTGCAAATTCAGCCTTCTGGAGTCCTTGTTGAACAAAACATGAATCATCAGGTATTATTTTCTCCTGACCAAGTTGGATTTAAAACAGACAAAACCTTTGGTTCCAGTCGTAGAAATCGGGGAAATCAGTTCTCTAGAAGCTTGGAAGCTACATTGAAACAGCATGCTCCTTCAGAATCTTCATCTGGAAATCCATGTTTATCTGTTGTTGACTTACCTGCCGTTGTTGGAAAGAATCATGATGGTCATTTGGTTGCAGCCACATCCATGCCATCTAACACTTCATCAAACCCCCAGGACACTATGGTTGGCAATGCTGGCAATGATGACGATGTCGGAACCTTTAGTCTATTTGGTGAAACTCCTTTTAAAAGAAGTATTGATTCCCCTTCAGCATGGAAATCCCCTTGGTTTATCAACTCTTTTGTGCCTGGCCCAAGAGTTGATACAGAAATATCAGTTGAGGATATAGAATATTTCATGAGCCCTGGGGATAGAAGCTATGATGCTATCGGGTTGATGAAACAGTTGAGCGAGCATACTGCAGAAACATTTGCTGATGCCAAGGAGGTTTTGAGAATTGGTGCTTCTGAAGTGATGTCAAAGGAAAGATGCTCTAGCAATAACAATCATGACCCAGATCATCAGCTGGAGAACCATTCCCATTTGGCTTCAGAAGTATTGACTGAGCGGGTACTCGACTTCAGTGACTGTGGCACACCTGGGAAGGAAACGACAAAGGGGAAATCTTCTGCTGCTCCTGGCTTTTCAAGTCCCTCTTCCTATCTGTTGAAGGGATGCAGGTAG 3159 0.4242 MESDRTITPPTEGVSDGFQKMRPPHGRTSGPTRRSTKGQWTAEEDEILCKAVQRYKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNKYGAKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALVRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYIASGLLAQFQGLPLVGHRNQSIHSSSSRMQQSSGDDSGAKGGIEAEEISECSQGSTAVGCSQSVSEMSNSGLHTREEFQMTEESGQGKEQSSSPISCSKQYYASIEEVTLSIPEIPCELDCPSNYLEPNFPHDARISGSVERQFNSNEQPAISSFELGQASSGLSSHFNGGNENRDTVSIPLQTSVGLNASSSMGNMGVDSDIPEHLLISEGDCCGFRFQEAGTDEYFSSENLTRCTNAIELECTDPLVCQSSDFQISETSGTSASQPYYPLRSEMLEASCCQSLLSVPSVHPAVDCTFIFGTETNQLSDCSLQTQGLDDFIYTNDSTNSICHNGTENKDLQEQPGPAKDSVNLVPVDSFGSGPSDIMHTCPSREGKQLAHTEQQDEGALFYEPPRFPSLDIPFFSCDLIQSGSDMQQEYSPLGIRQLMMSSMNCLTPFRLWDSPSRDDSPDAVLKSAAKTFTGTPSILKKRHRDLLSPSPLSERRSDKKLESDINQGFFCTSSLTKEFSRLDVMFDNSGTNQKSNSGPFDEDKENLGHVFVVGKEERRDGPPSSHNRNSEVDFDGRNSLDNIRQGNVDVDAKTKFDADADVQIQPSGVLVEQNMNHQVLFSPDQVGFKTDKTFGSSRRNRGNQFSRSLEATLKQHAPSESSSGNPCLSVVDLPAVVGKNHDGHLVAATSMPSNTSSNPQDTMVGNAGNDDDVGTFSLFGETPFKRSIDSPSAWKSPWFINSFVPGPRVDTEISVEDIEYFMSPGDRSYDAIGLMKQLSEHTAETFADAKEVLRIGASEVMSKERCSSNNNHDPDHQLENHSHLASEVLTERVLDFSDCGTPGKETTKGKSSAAPGFSSPSSYLLKGCR* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0364 1052 CDD SANT 91 135 IPR001005 -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 212 235 - -
Vvi4g0364 1052 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 212 230 - -
Vvi4g0364 1052 PANTHER MYB PROTEIN-RELATED 37 110 - -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 738 766 - -
Vvi4g0364 1052 FunFam Transcription factor MYB3R-2 142 204 - -
Vvi4g0364 1052 SMART sant 88 137 IPR001005 -
Vvi4g0364 1052 SMART sant 140 188 IPR001005 -
Vvi4g0364 1052 SMART sant 36 85 IPR001005 -
Vvi4g0364 1052 Gene3D - 36 88 - -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 1022 1052 - -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 738 761 - -
Vvi4g0364 1052 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Vvi4g0364 1052 FunFam Transcriptional activator Myb isoform A 36 88 - -
Vvi4g0364 1052 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Vvi4g0364 1052 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Vvi4g0364 1052 CDD SANT 40 83 IPR001005 -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 1027 1042 - -
Vvi4g0364 1052 Gene3D - 142 201 - -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 663 682 - -
Vvi4g0364 1052 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Vvi4g0364 1052 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Vvi4g0364 1052 FunFam Transcriptional activator Myb isoform A 89 141 - -
Vvi4g0364 1052 CDD SANT 143 183 IPR001005 -
Vvi4g0364 1052 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Vvi4g0364 1052 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Vvi4g0364 1052 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Vvi4g0364 1052 SUPERFAMILY Homeodomain-like 33 90 IPR009057 -
Vvi4g0364 1052 Gene3D - 89 140 - -
Vvi4g0364 1052 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Vvi4g0364 1052 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0364 Vvi-Chr4 3110588 3117846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0364 5 1052 MYB Transcription Factor Family AT4G32730 44.403 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0364 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0364 - K09420 vvi:100261001 2112.04