Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0353 ATGTCAGCCGTGCGATCATCGTCATCCTCATCTCACCGTCAAAAGTCTCAAAAATTCAATTTCAAAAGCTCGAGAGGGAGGAGAGGAGAGAAAAAGCCTAGACTGTACGTCTCTCCCTTCGTCTCCGATCCCGTACAAGTTGCAGGTGTAGATTCCGATCACCCCGAAACCGCTTCGGACGAGCTATTTCAGATTCCGTCGAGAGCGGCAGCCCGAGGCACTCAACGACACCGTTTTTTCATTCTTCGCGCGAACGAGGCATCTGATTTTCCGGCGAAGAGGCAATTGGATTTCACGGCGATGTGTCGAGCTTCGGCAAATGTGATCTTGCCGGAGCACCCGCAGTTACCGCTACAGACACAGCCACAACGATCACAATCACAGTCGCAGTGGCAGTTACAATCACAGTCACCGCCGCAGCTGTTGCCGCCACAGCCGCGGCCGCAACTAGTGCCGGTGGTACCGCGGATAACAAATCCCTCCCGGCCAACATTGCAAGCGGTCAAGCAAGAGTCACCAAGATCACTACCACGATCCAACAGTGAAGTGAAAGATGGAACTCCAAAGAAGAAAAAGCATTGTAATTGCAAAAATTCTCGATGTTTGAAATTGTACTGTGAGTGCTTTGCTTCGGGAGTTTATTGCAATAATTGCCACTGTTCAAACTGTCAAAATAATGTGGTGAATGAGGCTGCTAGGAAGGAGGCAGTTGGTTCAACCTTAGACCGTAATCCAAATGCATTCAGACCAAAGATTGCTAATAGTCCACATGGATCTCATGATGGTGGGGAAGAGGCTGGGAAAGTCCCATTGGTGGGAAAGCACAATAAAGGATGCCACTGCAAGAAATCAGGTTGCCTCAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTCTGTGCTCTGAGAACTGTAAATGTATGGATTGTAAGAACTTTGAGGGGAGTGAAGAGAGAAGGGCTCTTTTCCATGACAATGGAAACTACATGGCCTACATCCAACAGGCAGCCAATGCTGCCATTAGTGGGGCCATTGGATCCTCTGGCTATGGGACAGCTGTGGCATCCAAGAAGAGAAAACAACAAGTCTCCTTTTGTACAACAGCCAACAATCAATCGAATCATAGGAATACTCAATTTCAACAGGATAATCATCTAAGAGCTTCTGCTGTCTCTCCTTCGCCATCCATTTCTGTTACTCACACAAATAATGCAGCAGTATTGGGTTCTTCAAAATTCACATACAGGTCTCCATTAGCTGACATCTTACAACTGCAAGATGTGAAGGATCTTTGCTCTCTTTTGGTCGTAGTTTCACAGGAAGCTGGAAAAACACTCACAGAAGCGGAGAGGGATCACATTGAAACTTCTATTATTTCTTCAACTCAAGAGAGGGAACATCTTCAGACAGATGATGTTCAGAAACCATTGCCTGATGCTTGTTTGAGCGAAAACCAAGTGGAAAGAGTTCAAACAGATGAATTAGACCAAGCTGATGTACAAAATGGGAGACTCATGTCTCCTGGAACTCTTGCGTTGATGTGTGATGAGCAAGATTCAATCTTCATGGTACGTGGGTCTCCAGATGGGGTTGTTGGCAGTAGTCAAATCCCAACAGTGAAGTCATCTCATGGGCAAGCCTGCACTGAGGTTTATGTAGAGCAGGAAAGACTTGTGTTGACAAAGTTCTGGGATTTCCTTAACAGGCTCATCACTTGTGGGAGCATAAAAGAAACTATGTGTTCTCCATTAGCCAAAAGCCACACAGGAAACCAGCAAGAACCCTTGGAGGATGACGCCACAAAAGTTGGAACTGGAAAGGGGAATCACAAGGAGCCCAATGGCAATAGCATTGTAAAACCTTCTTTCGCAGCCACAACTCAAATGTCTCAGACAATCGCTGCGGCCAAAGGCAATGGCATTGCAAAACAAAAACCTCCTTTCCCAGCCACGACTCACATATCTCAGACAATCCCTGCAGTCCATGGCAATGGCACTGCAAAACCCCCTCCATCCACAAATCAAATGTCTTAA 2031 0.4643 MSAVRSSSSSSHRQKSQKFNFKSSRGRRGEKKPRLYVSPFVSDPVQVAGVDSDHPETASDELFQIPSRAAARGTQRHRFFILRANEASDFPAKRQLDFTAMCRASANVILPEHPQLPLQTQPQRSQSQSQWQLQSQSPPQLLPPQPRPQLVPVVPRITNPSRPTLQAVKQESPRSLPRSNSEVKDGTPKKKKHCNCKNSRCLKLYCECFASGVYCNNCHCSNCQNNVVNEAARKEAVGSTLDRNPNAFRPKIANSPHGSHDGGEEAGKVPLVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHDNGNYMAYIQQAANAAISGAIGSSGYGTAVASKKRKQQVSFCTTANNQSNHRNTQFQQDNHLRASAVSPSPSISVTHTNNAAVLGSSKFTYRSPLADILQLQDVKDLCSLLVVVSQEAGKTLTEAERDHIETSIISSTQEREHLQTDDVQKPLPDACLSENQVERVQTDELDQADVQNGRLMSPGTLALMCDEQDSIFMVRGSPDGVVGSSQIPTVKSSHGQACTEVYVEQERLVLTKFWDFLNRLITCGSIKETMCSPLAKSHTGNQQEPLEDDATKVGTGKGNHKEPNGNSIVKPSFAATTQMSQTIAAAKGNGIAKQKPPFPATTHISQTIPAVHGNGTAKPPPSTNQMS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0353 676 MobiDBLite consensus disorder prediction 1 69 - -
Vvi4g0353 676 SMART CXC_2 274 315 IPR033467 -
Vvi4g0353 676 SMART CXC_2 189 229 IPR033467 -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 115 191 - -
Vvi4g0353 676 ProSiteProfiles CRC domain profile. 190 314 IPR005172 -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 1 17 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 640 676 - -
Vvi4g0353 676 PANTHER TESMIN/TSO1-RELATED 103 576 IPR028307 -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 591 605 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 241 265 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 115 138 - -
Vvi4g0353 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 277 311 IPR005172 -
Vvi4g0353 676 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 226 IPR005172 -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 159 182 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 585 618 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 139 153 - -
Vvi4g0353 676 MobiDBLite consensus disorder prediction 648 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0353 Vvi-Chr4 3022802 3030353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0353 149 587 CPP Transcription Factor Family AT4G29000 53.105 4.39e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi4g0353 TCR 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0353 - K21776 vvi:100243881 1094.72