Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0342 ATGAGGACGCTTCCAATGGCAACAACGCCGTTTCAACACCTCTCTTCATCCCCACCTTTTCTCTCCTCTCTCAGATTCCCCACTTCTTCCTTCGCTTCTTCTCTCACTGGTTTCACCTCTTCTCGTCGACTCGCGCTTTTCCACCTTGGCACTGCTATACCTCAATCAGAGTTGTTGGGTGGAAAAACATTGAAGTTATTTAGAATGGAAGGAAACATGCTAGAGGCTGGCACAGCTGGAAATATGGCACAAGCTGCCGTTTCAGAGGGAAATGTACTGGAGTGGGCCAAAACTGACAAGCGAAGAATGCTTCACGTTGTTTACCGTGTGGGAAACTTGGACAAGACTATGAAATTCTATACTGAGTGCTTGGGGATGAAACTATTGAGGAGATGTGATATACCAGAGGAGAGATATGCGAATGCTTTTCTTGGATATGGGCCCGAGGATTCCCATTTTGTTGTTGAACTTACTTACAATTATGGAGTTGACAAAATCGACATTGGAACAGGTTTTGGCCATTTTGGTATTGCAGTTGAAGATGTCGCCAAAACAGTGGATCTGGTAAAGGCAAAGGGCGGAAAAGTTACCAGGGAGCCTGGTCCTGTTAAAGGTGGCAAAACAGTAATTGCATTCGTTGAAGATCCAGATGGTTATAAGTTTGAACTTTTGGAAAGAGAGCCTACACCAGAGCCCTTATGTCAAGTAATGCTTCGGGTGGGCGATCTTGATCGCTCCATAAAGTTTTATGAGAAGGCTTTTGGCATGGAGCTTCTCCGCAAAAGAGATAATCCTGAATACAAGTATACAATTGCTATGATGGGCTATGGTCCTGAAGATAAGAGTGCAGTGCTGGAATTGACTTATAACTATGGGGTCCTGGAATATGACAAAGGAAATGGCTATGCACAGATTGCAATTGGCACAGATGATGTTTATAAGACTGCAGAAGCAATCAGATTGTGTGGGGGGAAGATTACTCGTGAACCTGGGCCCTTGCCAGTTATCAACACTAAGATCACTGCCTGCTTGGACCCTGATGGATGGAAATCGGTCTTTGTTGATAATGCTGATTTTCTCAAGGAATTAGAGTGA 1095 0.4429 MRTLPMATTPFQHLSSSPPFLSSLRFPTSSFASSLTGFTSSRRLALFHLGTAIPQSELLGGKTLKLFRMEGNMLEAGTAGNMAQAAVSEGNVLEWAKTDKRRMLHVVYRVGNLDKTMKFYTECLGMKLLRRCDIPEERYANAFLGYGPEDSHFVVELTYNYGVDKIDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGKTVIAFVEDPDGYKFELLEREPTPEPLCQVMLRVGDLDRSIKFYEKAFGMELLRKRDNPEYKYTIAMMGYGPEDKSAVLELTYNYGVLEYDKGNGYAQIAIGTDDVYKTAEAIRLCGGKITREPGPLPVINTKITACLDPDGWKSVFVDNADFLKELE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0342 364 FunFam Lactoylglutathione lyase 229 364 - -
Vvi4g0342 364 ProSitePatterns Glyoxalase I signature 1. 235 256 IPR018146 GO:0004462|GO:0046872
Vvi4g0342 364 CDD GlxI_Ni 103 224 - -
Vvi4g0342 364 Gene3D - 76 228 IPR029068 -
Vvi4g0342 364 Gene3D - 229 364 IPR029068 -
Vvi4g0342 364 ProSitePatterns Glyoxalase I signature 1. 105 126 IPR018146 GO:0004462|GO:0046872
Vvi4g0342 364 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 232 356 IPR037523 -
Vvi4g0342 364 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 101 231 IPR029068 -
Vvi4g0342 364 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 102 226 IPR037523 -
Vvi4g0342 364 ProSitePatterns Glyoxalase I signature 2. 169 181 IPR018146 GO:0004462|GO:0046872
Vvi4g0342 364 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 233 354 IPR029068 -
Vvi4g0342 364 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 235 350 IPR004360 -
Vvi4g0342 364 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 103 223 IPR004360 -
Vvi4g0342 364 NCBIfam lactoylglutathione lyase 102 228 IPR004361 GO:0004462|GO:0046872
Vvi4g0342 364 PANTHER LACTOYLGLUTATHIONE LYASE 80 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0342 Vvi-Chr4 2911649 2917092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0342 235 353 Calmodulin-binding Proteins AT1G08110 28.966 2.86e-11 61.2