Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0341 ATGGCACACCTACTAATTTCCTGGAAAAATAAAGTGCCACCCTCTATAGAGGTGAAGGAGGAAGCTGATTCCTTATATAACTCTCCCATCTTCGATCCTGCCAAGCCAAAGCCTGACTCCACCACCCCCCATTCCTCTCTCAACATGGCCAAGATGGCTCTCGGCTCCGGCCGTGAGTTCGCCCAGCCCGACTGCATCCGAGCTCTCGTCATGGAGTTCATCGTCACCTTCCTGTTCGTCTTCGCGGGTGTCGGCTCCGCCATGGCCACCGAGAAGCTGAAGGGAGATTCACTGGACTCCCTGTTTTTTGTGGCGATGGCACATGCGCTGGTGGTGGCGGTCATGGTATCGGCGGCGCTGCAGATCTCCGGTGGCCACCTGAACCCGGCGGTGACTCTTGGTCTCTGCGTGGGTGGTCACATCACCGTTGTGAGATCCGTCCTGTACTTCATCGATCAGTGTTTGGCTTCTACTGTAGCCTGTATTCTCCTCAAGTTTCTCACTGGTGGACGGGCAACTCCAGTGCACACACTGGCGAGTGGAGTGGGGTGTCTACAAGGGGTAATGCTAGAATTTATCCTCACGTTCTCGTTGTTGTTCACAGTCTATGCCAATATAGTATCAGCACAGAAGTCTGCCCACATTGATGGGCTGGGCCCAATGATAACTGGGCTTGTGGTGGGGGCCAACGTCATGGCTGGTGGGGCCTTTTCCGGGGCTTCCATGAACCCGGCCCGGTCCTTCGGGCCGGCTTTGGTGAGCTGGGACTGGACAAACCACTGGGTGTACTGGGTTGGGCCACTGGTAGGTGGTGCGGTGGCTGGATTTGTGTATGAGAACTTTTTCATTAACAGACCCCATCTTCGTCTCCCAACAAGAGACGAAGAAGAAGAAGAAGGCTTCTAA 906 0.5497 MAHLLISWKNKVPPSIEVKEEADSLYNSPIFDPAKPKPDSTTPHSSLNMAKMALGSGREFAQPDCIRALVMEFIVTFLFVFAGVGSAMATEKLKGDSLDSLFFVAMAHALVVAVMVSAALQISGGHLNPAVTLGLCVGGHITVVRSVLYFIDQCLASTVACILLKFLTGGRATPVHTLASGVGCLQGVMLEFILTFSLLFTVYANIVSAQKSAHIDGLGPMITGLVVGANVMAGGAFSGASMNPARSFGPALVSWDWTNHWVYWVGPLVGGAVAGFVYENFFINRPHLRLPTRDEEEEEGF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0341 301 CDD MIP 67 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 FunFam Probable aquaporin TIP1-1 50 295 - -
Vvi4g0341 301 Pfam Major intrinsic protein 61 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 67 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 145 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 108 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 190 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi4g0341 301 ProSitePatterns MIP family signature. 126 134 IPR022357 -
Vvi4g0341 301 PANTHER AQUAPORIN-8 52 285 IPR034294 -
Vvi4g0341 301 SUPERFAMILY Aquaporin-like 60 294 IPR023271 -
Vvi4g0341 301 Gene3D Glycerol uptake facilitator protein. 50 291 IPR023271 -
Vvi4g0341 301 NCBIfam MIP family channel protein 72 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0341 Vvi-Chr4 2904161 2905753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0341 49 297 Major Intrinsic Protein MIP AT2G25810 68.273 1.40e-110 319