Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0332 ATGCTCATTGCCAATCCCTCAAAGGTTACTACTGTCTTCTCCGGCGGCTGCTCCATATCCAACGAGTACAAGTGCCAGCCAACTAACAACCAGTCTAATGCTGTCTCGTCAGAATTTCAGGGCATGGCAGCATTAGTTGTGGACCCCAACCCTGTACGGGCCAAGGTGTCAAGGCATCATATCCAGCGGCTGGGGATCCATGTTGAAGTCACTTCAGATTTGAATCAAGTTTTCTCCGGCATAAGCAGTGGGAATACAGCTATCAACAGAGTCCTAGTTGAACATGACGTTTGGGATAAGGACTCAAACCTTTCTGCTCTCTTTGTTAATAAATTAAAGAAACTTGATCTGGAGGTTCCTCCTAAACTGTTTCTTCTAGCTAATTCCATCAGCTCTACCAGAAATAGTGCTGCAATTTCTGGGGTTTATAATTCAACTGTCATCATGAAGCCTCTGAGGGCCGGTATGCTGGCTGCATCTCTACAGCGAGCCCTGGGTGTTGGGAACAAGGGGGTTTGCCAGAATGGAGAGCACCCCAGTTTGTCTCTCCGCAGTCTTCTTCGTGGGAGAAAAATTCTAGTTGTGGATGACAATAATGTGAACCTCAGAGTAGCTGCTGGTGCATTGAAGAAGTATGGAGCTGATATGGTCTGTGCAGACAGTGGAAAAAGTGCAATCCCACTGCTTAAACCTCCCCACGACTTTGATGCCTGTTTCATGGACATCCAGATGCCAGAAATGGACGGGTTTGAGGCTACTGGGATAATTAGGGAAATGGAACGGAACGTCAATAGTCGAATCCAACATGGAGAAGTTTCTGTGGAAGCTTATGCAAATATTTCGAACTGGCACCTACCCATTTTGGCCATGACTGCAGATGTCATCCAGGCCACACACGAGGAATGCCTGAGGTGCGGAATGGATGGACACGTATCAAAACCATTTGAAGCCGAACAACTTTATCGCGAGGTTTCACGCTTCTTTCAACCACCTCCAGAACAGAACCAATAG 1011 0.4698 MLIANPSKVTTVFSGGCSISNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRHHIQRLGIHVEVTSDLNQVFSGISSGNTAINRVLVEHDVWDKDSNLSALFVNKLKKLDLEVPPKLFLLANSISSTRNSAAISGVYNSTVIMKPLRAGMLAASLQRALGVGNKGVCQNGEHPSLSLRSLLRGRKILVVDDNNVNLRVAAGALKKYGADMVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDGHVSKPFEAEQLYREVSRFFQPPPEQNQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0332 336 SMART REC_2 190 324 IPR001789 GO:0000160
Vvi4g0332 336 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 321 - -
Vvi4g0332 336 CDD REC_hyHK_CKI1_RcsC-like 192 324 - -
Vvi4g0332 336 ProSiteProfiles Response regulatory domain profile. 43 165 IPR001789 GO:0000160
Vvi4g0332 336 FunFam Histidine kinase 3 185 332 - -
Vvi4g0332 336 Pfam Response regulator receiver domain 192 323 IPR001789 GO:0000160
Vvi4g0332 336 Gene3D - 185 330 - -
Vvi4g0332 336 CDD PRTases_typeI 146 214 IPR000836 -
Vvi4g0332 336 ProSiteProfiles Response regulatory domain profile. 191 328 IPR001789 GO:0000160
Vvi4g0332 336 SUPERFAMILY CheY-like 39 166 IPR011006 -
Vvi4g0332 336 SUPERFAMILY CheY-like 187 328 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0332 Vvi-Chr4 2870334 2871344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0332 8 333 Miscellaneous Gene Families AT1G27320 57.798 9.90e-126 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi4g0332 Response_reg 8.1e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0332 K14489 - vvi:100252542 661.759