Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0332 | ATGCTCATTGCCAATCCCTCAAAGGTTACTACTGTCTTCTCCGGCGGCTGCTCCATATCCAACGAGTACAAGTGCCAGCCAACTAACAACCAGTCTAATGCTGTCTCGTCAGAATTTCAGGGCATGGCAGCATTAGTTGTGGACCCCAACCCTGTACGGGCCAAGGTGTCAAGGCATCATATCCAGCGGCTGGGGATCCATGTTGAAGTCACTTCAGATTTGAATCAAGTTTTCTCCGGCATAAGCAGTGGGAATACAGCTATCAACAGAGTCCTAGTTGAACATGACGTTTGGGATAAGGACTCAAACCTTTCTGCTCTCTTTGTTAATAAATTAAAGAAACTTGATCTGGAGGTTCCTCCTAAACTGTTTCTTCTAGCTAATTCCATCAGCTCTACCAGAAATAGTGCTGCAATTTCTGGGGTTTATAATTCAACTGTCATCATGAAGCCTCTGAGGGCCGGTATGCTGGCTGCATCTCTACAGCGAGCCCTGGGTGTTGGGAACAAGGGGGTTTGCCAGAATGGAGAGCACCCCAGTTTGTCTCTCCGCAGTCTTCTTCGTGGGAGAAAAATTCTAGTTGTGGATGACAATAATGTGAACCTCAGAGTAGCTGCTGGTGCATTGAAGAAGTATGGAGCTGATATGGTCTGTGCAGACAGTGGAAAAAGTGCAATCCCACTGCTTAAACCTCCCCACGACTTTGATGCCTGTTTCATGGACATCCAGATGCCAGAAATGGACGGGTTTGAGGCTACTGGGATAATTAGGGAAATGGAACGGAACGTCAATAGTCGAATCCAACATGGAGAAGTTTCTGTGGAAGCTTATGCAAATATTTCGAACTGGCACCTACCCATTTTGGCCATGACTGCAGATGTCATCCAGGCCACACACGAGGAATGCCTGAGGTGCGGAATGGATGGACACGTATCAAAACCATTTGAAGCCGAACAACTTTATCGCGAGGTTTCACGCTTCTTTCAACCACCTCCAGAACAGAACCAATAG | 1011 | 0.4698 | MLIANPSKVTTVFSGGCSISNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRHHIQRLGIHVEVTSDLNQVFSGISSGNTAINRVLVEHDVWDKDSNLSALFVNKLKKLDLEVPPKLFLLANSISSTRNSAAISGVYNSTVIMKPLRAGMLAASLQRALGVGNKGVCQNGEHPSLSLRSLLRGRKILVVDDNNVNLRVAAGALKKYGADMVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFEATGIIREMERNVNSRIQHGEVSVEAYANISNWHLPILAMTADVIQATHEECLRCGMDGHVSKPFEAEQLYREVSRFFQPPPEQNQ* | 337 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0332 | 336 | SMART | REC_2 | 190 | 324 | IPR001789 | GO:0000160 | |
Vvi4g0332 | 336 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 27 | 321 | - | - | |
Vvi4g0332 | 336 | CDD | REC_hyHK_CKI1_RcsC-like | 192 | 324 | - | - | |
Vvi4g0332 | 336 | ProSiteProfiles | Response regulatory domain profile. | 43 | 165 | IPR001789 | GO:0000160 | |
Vvi4g0332 | 336 | FunFam | Histidine kinase 3 | 185 | 332 | - | - | |
Vvi4g0332 | 336 | Pfam | Response regulator receiver domain | 192 | 323 | IPR001789 | GO:0000160 | |
Vvi4g0332 | 336 | Gene3D | - | 185 | 330 | - | - | |
Vvi4g0332 | 336 | CDD | PRTases_typeI | 146 | 214 | IPR000836 | - | |
Vvi4g0332 | 336 | ProSiteProfiles | Response regulatory domain profile. | 191 | 328 | IPR001789 | GO:0000160 | |
Vvi4g0332 | 336 | SUPERFAMILY | CheY-like | 39 | 166 | IPR011006 | - | |
Vvi4g0332 | 336 | SUPERFAMILY | CheY-like | 187 | 328 | IPR011006 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g0332 | Vvi-Chr4 | 2870334 | 2871344 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g0332 | 8 | 333 | Miscellaneous Gene Families | AT1G27320 | 57.798 | 9.90e-126 | 383 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Vvi4g0332 | Response_reg | 8.1e-18 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0332 | K14489 | - | vvi:100252542 | 661.759 |