Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0326 ATGGCTGAGCCGCTGAATTCTGAAACTGAGAGCAGTTCCAACTCTGGCTCTTCTTCTTCATCGTCTCCGTCCTCTCCTGGCTCGACTCAGTCACGTCCCAACTCCTCGAAACCGGAGCCAGAGTCGAAGAAGATGAAGAGAATCCGGGACTCCAGCAAACACCCGGTATACCGGGGGGTGAGAATGCGGAACTGGGGCAAATGGGTGTCTGAAATTCGGGAGCCTCGCAAGAAATCGCGTATCTGGCTCGGCACTTTCCCTACGCCTGAAATGGCTGCCAGAGCTCACGACGTGGCGGCGTTGAGCATCAAAGGAAACTCCGCGATTCTCAATTTTCCCCAACTAGCCGCCTCGCTGCCTCGCCCCGTCTCACTCGCTCCACGCGACGTCCAAGCGGCCGCGGCCAAGGCCGCGGCGATGGATAAATTCGACTCTCCGTCATCCTCCTCCTCGTCCTCATCATTGTCGTCATTGGTGTCCTCCATCGACCTATCGACGGCGTCGGATGAATTGAGCGAAATCGTCGAGTTACCCAATCTGGATCCGAGTTTCGACTCGCCGGAGTCCAAGACCGATTTCGTGTTCGACGACTCTGCTGATGGGTGGCTCTACCCTCCACCATGGCTGCAGAGTGTCGAGGATTGTGGGTATTTCTCCGAACAGTTACTGGTGCCAGAGAGTTTGATCCCCGGTAGCTTTGAAGCCTTTTTGTGGGATAATAACTAG 726 0.5579 MAEPLNSETESSSNSGSSSSSSPSSPGSTQSRPNSSKPEPESKKMKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPQLAASLPRPVSLAPRDVQAAAAKAAAMDKFDSPSSSSSSSSLSSLVSSIDLSTASDELSEIVELPNLDPSFDSPESKTDFVFDDSADGWLYPPPWLQSVEDCGYFSEQLLVPESLIPGSFEAFLWDNN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0326 241 MobiDBLite consensus disorder prediction 1 36 - -
Vvi4g0326 241 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Vvi4g0326 241 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vvi4g0326 241 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Vvi4g0326 241 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Vvi4g0326 241 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vvi4g0326 241 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vvi4g0326 241 MobiDBLite consensus disorder prediction 37 55 - -
Vvi4g0326 241 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vvi4g0326 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 183 - -
Vvi4g0326 241 MobiDBLite consensus disorder prediction 1 55 - -
Vvi4g0326 241 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vvi4g0326 241 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0326 Vvi-Chr4 2818530 2819255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0326 34 214 AP2-EREBP Transcription Factor Family AT5G11590 69.110 1.15e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi4g0326 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0326 K09286 - vvi:100268038 409.453