Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0316 ATGGAGTCTGTTGCCTCCAATTCATCGCCACCGGAGCATCGGTTGCACCCCCGGTTTAAACCTACACAGCCTGTTGCAGACCGGATAGTCAGAGCCATCCGCCACCGCCTTCGTCTCCTTCATCGCTCTGAGTCCAACTTCTTTGTGTTGGGCGCCACTGGGAATGTGTATACGGTGACTTTATCCACCAACCCATCATGCACCTGCCCAGACAGGACAACACCCTGCAAGCATATTCTGTTTGTGTTCATAAAGGTATTGGGGGTCTCTCTTGATGATTCGTGTCTCAGGAGGAGGACTCTGAGGCCGTGCCTGCTTAGTCACCTGCTTAGCAAGCCTACATCGCCTGAAGCAGTGGCAGGGGCTGGTGTTCGAGAGAGGTTTCATCAGCTCTTCTTGCAGGCAAGGGAGGGCTCTTCCAGGCCGGCAATTGAAATAGAGGATGGTACCATGTGTCCTGTTTGTCTTGATGAGATGGGAAGAGGGGAGAAGGTGGTGGCTTGTGGAACATGTAGGAATCCCATACATGAGGAATGCTTGTTGACGTGGAAGAGGACTAGAGGGAGGAGGTCAGCTAGCTGTGTCATTTGTCGGGCCAGGTGGAGCAATAGGACAGATCAGGAGAGGTATCTGAACCTGGCTGCTTATGTTACTGATGATGATGAGGTTGCTGAGGGAGATGGGGGTCTCTGGGGTGATTAG 702 0.5285 MESVASNSSPPEHRLHPRFKPTQPVADRIVRAIRHRLRLLHRSESNFFVLGATGNVYTVTLSTNPSCTCPDRTTPCKHILFVFIKVLGVSLDDSCLRRRTLRPCLLSHLLSKPTSPEAVAGAGVRERFHQLFLQAREGSSRPAIEIEDGTMCPVCLDEMGRGEKVVACGTCRNPIHEECLLTWKRTRGRRSASCVICRARWSNRTDQERYLNLAAYVTDDDEVAEGDGGLWGD* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0316 233 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 14 206 IPR039903 GO:0061630
Vvi4g0316 233 MobiDBLite consensus disorder prediction 1 21 - -
Vvi4g0316 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 215 IPR013083 -
Vvi4g0316 233 Pfam Ring finger domain 151 198 IPR001841 -
Vvi4g0316 233 SUPERFAMILY RING/U-box 143 207 - -
Vvi4g0316 233 ProSiteProfiles Zinc finger RING-type profile. 152 198 IPR001841 -
Vvi4g0316 233 ProSiteProfiles Zinc finger SWIM-type profile. 57 87 IPR007527 GO:0008270
Vvi4g0316 233 Pfam SWIM zinc finger 57 85 IPR007527 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0316 117 198 C3H Transcription Factor Family AT2G46495 29.268 6.43e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0316 - - vvi:100266212 463.766