Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0313 ATGGAGGCACCGGAGTTTTTCCAAGGGGGCTTCTGCATAGCTCCGGCATCGCAATTCGGGACGGAGAAGCGCATTTCTGATACCAAGCCCGGCGGTGGTGACCACTTTATCATTGAAGACCTCCTCGACTTCTCCAACGACGATGCCGTCATTACCGACGGCACCTTCGATACGGTCACCGGAACCTCAACAGATTCTTCCACCTTCACCATCGTCGACAGCTGCAACTCCGTCTCTGGTTGTGAGCCGCAGTTCGCCGGAGATATTGGGTCTCGGAATTACACTGATGCTCATTTCTCTAGCGACCTATGCGTGCCGTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCAGCTAATTTCGGGAATGAAAGCGAACACTGAGGAAGCATCCGAAACCCGCGACTTCCAACCCGAAAACAACCAAAACCCACCGCTATCGCTGCGAGATTTTCCGGCCAAGGCTCGAAGCAAGCGCGCACGAGCCATGCCATGCAAGTGGACGTCGCGCCTTCTCGCGCTTTCCCCTACAAGTTCCTTGTCAGAAACCGACATCATCCCCCCGAATTCCGGCAAGAAATCGACGAAATCGGCTCCCAAAAAGAAGGAAAGCCCCGAAGTTGTGGCCGGAGGCTGCAGCGATGGGCGGAAATGCTTGCACTGCGCCACAGACAAGACTCCGCAGTGGCGAACCGGACCCATGGGACCCAAAACTCTGTGCAATGCTTGCGGGGTCAGGTACAAGTCGGGGCGACTCGTACCTGAATATCGACCCGCAGCGAGCCCGACATTTGTGTTGACAAAGCACTCGAACTCGCACCGAAAAGTGTTGGAGCTCCGAAGGCAGAAGGAGATGGTAAGGTCCCAGCACCAGCATCAGCAGCAGCAGTTCCTTCATCATCAGAACATGGTTTTCGACGTACCCAACGGTGACGATTACTTGATCCACCAGCACCTGGGCCCCGATTTCAGGCACCTGATATAG 1029 0.5481 MEAPEFFQGGFCIAPASQFGTEKRISDTKPGGGDHFIIEDLLDFSNDDAVITDGTFDTVTGTSTDSSTFTIVDSCNSVSGCEPQFAGDIGSRNYTDAHFSSDLCVPYDDLAELEWLSNIVEESFSSEDLEKLQLISGMKANTEEASETRDFQPENNQNPPLSLRDFPAKARSKRARAMPCKWTSRLLALSPTSSLSETDIIPPNSGKKSTKSAPKKKESPEVVAGGCSDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQHQHQQQQFLHHQNMVFDVPNGDDYLIHQHLGPDFRHLI* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0313 342 PANTHER GATA TRANSCRIPTION FACTOR 17 309 - -
Vvi4g0313 342 MobiDBLite consensus disorder prediction 142 164 - -
Vvi4g0313 342 MobiDBLite consensus disorder prediction 193 209 - -
Vvi4g0313 342 MobiDBLite consensus disorder prediction 193 224 - -
Vvi4g0313 342 PIRSF Txn_fac_GATA_plant 19 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi4g0313 342 Gene3D - 228 313 IPR013088 GO:0006355|GO:0008270
Vvi4g0313 342 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Vvi4g0313 342 FunFam GATA transcription factor 225 310 - -
Vvi4g0313 342 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Vvi4g0313 342 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Vvi4g0313 342 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Vvi4g0313 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 291 - -
Vvi4g0313 342 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0313 Vvi-Chr4 2730051 2731513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0313 31 342 C2C2-Gata Transcription Factor Family AT4G32890 50.621 6.46e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi4g0313 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0313 - - vvi:100266300 660.218