Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0311 ATGATGGCGGTTAGTTCGAGCTGTAAGGATGCGAAAATGGCGTTGGACAATGGGAAGTATGTTAGGTACACGCCCGAGCAGGTCGAAGCGCTCGAGAGGTTGTATCACGACTGCCCGAAACCCAGCTCGCTTCGCCGCCAGCAGCTTATCAGGGAATGCCCAATTCTCTCCAACATCGAGCCCAAGCAGATTAAAGTTTGGTTTCAGAACCGAAGATGCAGAGAAAAGCAGCGGAAGGAGGCGTCACGCCTCCAAGCTGTGAATAGGAAGCTAACAGCCATGAATAAGCTGTTAATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCACAGCTGGTGTATGAGAACAGTTTTTTCCGCCAACAAACTCAGAATGCGACCCTTGCCACCACAGACACCAGTTGTGAATCGGTGGTGACAAGTGGTCAACACCATTTGACTCCTCAGCATCCACCAAGGGATGCCAGTCCTGCAGGACTTTTGTCTATTGCAGAGGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGCGCATGCGGCCTTGTCAGTCTAGAGCCAACAAGAGTCGCAGAAATCCTCAAAGATTGGCCTTCATGGTATCGTGAGTGCCGCAATGTGGATGTTCTTAATGTGTTGTCTACTGGAAATGGTGGAACCATAGAACTGCTTTACATGCAGCTCTATGCGCCTACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTCCGTTATACATCTGTTTTGGAGGATGGGAGTCTTGTGGTCTGTGAAAGGTCACTTAACAACACTCAGAATGGCCCAAGTATGCCACCGGTGCAGTATTTTGTGAGAGCTGAAAAGCTACCAAGTGGGTATTTGATAAGACCCTGTGAAGGGGGTGGATCAATCATTCATATAGTTGATCATATGGATTTAGAGCCATGGAGTGTACCTGAAGTGTTGCGCCCTCTCTATGAGTCATCAACATTGCTTGCTCAGAAGACCACAATGGCGGCTTTACGCCAACTGAGGCAGATATCTCAAGAGGTTTCCCAGCCAACAAATACTGGTTGGGGAAGAAGGCCTGCAGCTCTGCGTGCACTTGGCCAGAGGCTAACCAAGGGTTTTAATGAAGCTGTTAATGGGTTTACGGATGAAGGATGGTCTATGATGGAAAGTGATGGTATTGATGATGTTACCCTTCTTGTGAACTCCTCTCCTGCGAAAATGATGGGAGTAAATCTTTCTTATGCCAGTGGATTTCCATCTATGAGCAATGCAGTGCTGTGTGCCAAAGCATCTATGCTTTTACAGAATGTGCCTCCTGCAATACTTCTTAGATTCTTGAGGGAACACCGATCAGAATGGGCAGACAGCAGTATTGATGCTTATTCTGCGGCTGCTGTTAAAGCTGGCCCCTGTACCTTACCAGTGTCTCGAGCTGGAGGTTATGGGGGTCAGGTCATTCTCCCACTGGCTCACACTATTGAGCATGAAGAGTTCATGGAGGTCATTAAACTTGAAAATGTTGATCACTATCGGGAAGACCTGATGATGTCTGGAGATGTCTTCCTCTTGCAACTTTGTAGTGGAGTGGACGATAATGCTGTGGGCACCTGTTCTGAACTCATCTTTGCTCCAATTGATGCCTCTTTCTCTGATGATGCACCTCTTCTTCCTTCTGGTTTTCGAATTATTCCCCTTGATTCTGGGGTGGATGGCTCTAGTCCAAATCGTACCCTCGACCTTGCTTCTTCTCTTGAAGTCGGGCCAGCTGGAAACAAGGCATCTAGTGACAACTCTGGGCACACTGGGAGCGCAAAATCTGTGATGACAATATCATTTCAATTTGCGTTTGAAATGCACCTTCAAGAAAATGTGGCATCCATGGCTCGGCAGTATGTCCGCAGTATCATATCATCTGTTCAGAGAGTGGCATTAGCACTCTCTCCTTCTCGATTTGGCCCTCAAATGGGTTTTCGCCCACTACCAGGCACTCCTGAGGCGCACACACTTGCTCGGTGGATCTGTCAGAGCTATAGGTGCTATTTGGGAGTGGAGCTGCTCAAACCCAGTAATGAAGGAAATGAATCCATTCTCAAAACTCTCTGGCATCACTCTGATGCTGTCATGTGCTGCTCGTTAAAGGCACTGCCAGTTTTTACATTTGCAAATCAGGCAGGGCTTGACATGCTTGAGACAACCTTAGTAGCCCTTCAGGATATAACTCTGGAGAAGACCTTTGATGACAATGGAAGAAAGACCCTCTGCTCTGAGTTCCCACAGATAATGCAGCAGGGTTTTGTGTGTCTTCAAGGTGGTGTTTGCTTGTCTAGCATGGGGAGGCCGGTCTCCTACGAGAGAGCAGTGGCTTGGAAGGTGTTGACCGAAGAGGACAATGCTCATTGCATATGCTTCATGTTCATCAACTGGTCTTTCGTTTGA 2523 0.4804 MMAVSSSCKDAKMALDNGKYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPTRVAEILKDWPSWYRECRNVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQYFVRAEKLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRQLRQISQEVSQPTNTGWGRRPAALRALGQRLTKGFNEAVNGFTDEGWSMMESDGIDDVTLLVNSSPAKMMGVNLSYASGFPSMSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCTLPVSRAGGYGGQVILPLAHTIEHEEFMEVIKLENVDHYREDLMMSGDVFLLQLCSGVDDNAVGTCSELIFAPIDASFSDDAPLLPSGFRIIPLDSGVDGSSPNRTLDLASSLEVGPAGNKASSDNSGHTGSAKSVMTISFQFAFEMHLQENVASMARQYVRSIISSVQRVALALSPSRFGPQMGFRPLPGTPEAHTLARWICQSYRCYLGVELLKPSNEGNESILKTLWHHSDAVMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKTFDDNGRKTLCSEFPQIMQQGFVCLQGGVCLSSMGRPVSYERAVAWKVLTEEDNAHCICFMFINWSFV* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0311 840 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Vvi4g0311 840 CDD homeodomain 19 79 IPR001356 GO:0003677
Vvi4g0311 840 SMART START_1 162 372 IPR002913 GO:0008289
Vvi4g0311 840 SUPERFAMILY Bet v1-like 162 373 - -
Vvi4g0311 840 CDD bZIP 71 110 - -
Vvi4g0311 840 Pfam MEKHLA domain 697 839 IPR013978 -
Vvi4g0311 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 840 IPR044830 GO:0003700
Vvi4g0311 840 CDD START_ArGLABRA2_like 157 372 - -
Vvi4g0311 840 Coils Coil 74 115 - -
Vvi4g0311 840 SMART HOX_1 16 82 IPR001356 GO:0003677
Vvi4g0311 840 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Vvi4g0311 840 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Vvi4g0311 840 Gene3D - 197 377 IPR023393 -
Vvi4g0311 840 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Vvi4g0311 840 Gene3D - 12 85 - -
Vvi4g0311 840 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Vvi4g0311 840 Pfam START domain 163 371 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0311 Vvi-Chr4 2700862 2709557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0311 15 840 Homeobox Transcription Factor Family AT4G32880 81.107 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi4g0311 START 1.8e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0311 K09338 - vvi:100243970 1682.92