Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0310 ATGGCCAAAAGAGGAGCTCAAACATGTGGATTATTTATCATCTCCATGTTCTTCTTCTTCTTCAGTTTTGGCATGTCCGCAAGGGAGGAGATAGAGCTGCTGCTCTCCTTCAAAGCTTCAATCAATGATCCGCTTGGGTTTCTCTCCAATTGGAATTCCTCCGTTGATTTTTGCAACTGGTATGGTATCTTATGTACGAACTCATCTCATGTTTCCAGTATTGATCTCTCCGGGAAGAACATCTCCGGCGAGATTTCTCCTGTATTTTTCGGTTTGCCGTATATTGAAACTGTCAATCTCTCCAACAATGCTCTTTCCGGTGGAATTCCGGGCAACATCTCTTTGTGTTATTCGCTTCGATATCTCAATCTTAGTAACAATAATTTGACGGGTTCTATGCCAAGGGGCTCAGCTTCCGGGCTTGAAGCTTTGGATCTCTCCAACAATGTGATTTCCGGTGAAATTCCAGCGGATATGGGATTATTTTCCAGACTCAAGGTGCTTGATCTTGGTGGAAATTTTTTGGTGGGGAAGATTCCAAATTCTATTGCAAATATCACAAGTTTAGAATTCTTGACTTTGGCTTCCAACCAATTGGTTGGCGAAATTCCTAGAGAATTAGGCCGAATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAATCTCTCCGGTGGTATTCCAAAAGAGATAGGCGAGTTAACTTCTCTGAACCATCTTGATCTTGTCTACAACAATCTCACTGGTGAAATCCCATCCTCCCTTGGAAACCTCAGCGACCTTCACTTCCTCTTTCTCTACCAAAACAAGCTTTCGGGTTCAATCCCTCCTTCCATTTTCGACCTTAAAAAGTTGATTTCGCTTGATTTAAGCGATAATTCTCTTTCGGGTGAGATTCCGGAGCTTGTAATTCAGTTGCAGAACTTGGAGATTCTTCATTTGTTTGCCAACGATTTTACTGGGAAGATTCCAAGAGCTTTAGCTTCTTTGCCTCGGCTTCAAATCCTCCAACTATGGTCCAACAAATTGTCCGGGGAGATTCCGAAGAACCTTGGCAAACAAAATAATCTCACAGTACTGGACCTCTCCACCAACAATCTCTCCGGAGAAATTCCCGAGAGCCTTTGCAACTCAGGGCGCCTCTTTAAACTCATCCTCTTCTCAAACTCACTGGAAGGTGAAGTCCCAAAGAGTTTAAGTGACTGCAGAAGCTTGCGGCGAGTCCGCCTTCAGAGCAATCACTTCTCAGGTGAATTGTCATCGGAATTCATGAAGCTGCCCCTAGTCTACTTCCTTGATATCTCGGATAACAATCTTACAGGCAAAATCAGTGATCGGAGGTGGGATATGCCATCACTTCAGATGTTGAGTTTAGCAAGAAACAGATTTTTTGGGAACTTGCCTCAGTCTTTCGGTGCTAGCAAGCTTGAGAACTTAGACTTGTCGGAAAATCAGTTTTCCGGTGCCGTCCCGTCGAGTTTTGGGAACTTGTCCGAGCTCATGCAGTTAAAGCTGAGTGAAAACATGCTTTCAGGTGATATCCCAGAAGAATTATCGTCATGTAAGAAGCTTGTGAGTCTAAACCTCAGCCACAATCAGCTCAGTGGTCATATTCCCGCTAGTTTCTCTGACATGCCAGTTCTTGGACAGCTCGATTTGTCTCAGAATCAATTATCGGGAAAAATCCCACCGAATTTAGGGAGAGTGGAATCACTTGTTCAAGTGAATCTTTCCAACAATCATTTGCATGGCAGTTTACCTTCCACCGGAGCGTTCCTCGCCATCAATTCAAGCTCAGTTTCAGGAAACAATCTTTGTGGTGGGGATACTACAAGTGGGTTGCCACCATGCAAAAGGTTAAAAACCCCAGTTTGGTGGTTCTTCGTTACTTGTCTTCTGGTTGTCTTGGTGGTGCTTGCTCTTGCTGCTTTTGCCGTTGTGTTCATCCGACGCCGAGATGGATCAGAGCTCAAGAGAGTAGAACATGAAGATGGGATGTGGGAAATGCAGTTCTTTGATTCCAAGGCCTCAAAATCAATCACAATCAAAGGCATACTGTCATCTACAACAGAAAATAATGTGATTTCAAGAGGAAGGAAAGGGATTTCATACAAGGGGAAGACTAAAAATGGTGAGATGCAATTTGTGGTGAAGGAAATAAATGATAGTAACTCAATTCCTTCTAGTTTCTGGACAGAATTCGCTCAATTTGGTAAGCTTCGGCATTCAAATGTTGTCAAGCTAATCGGACTGTGCCGGTCTCAAAAGTGTGGATATTTGATTTCTGAGTACATAGAAGGGAAGAATTTGAGTGAAGTTCTTCGAAGTCTAAGCTGGGAGCGTAGACAAAAAATTGCCATTGGGATATCAAAAGCCCTAAGATTTCTGCACTGTAATTGTTCACCCAGTATGGTGGTCGGTAACATGTCACCACAGAAGATCATAATCGACGGAAAGGATGAGCCTCACCTGAGACTGAGTCCTCCATTGATGGTCTGTACAGACTTCAAATGCATCATATCCTCAGCCTATTTTGCCCCAGAAACCAGAGAAACTAAAGACACAACAGAGAAGAGCGATATCTATGGATTTGGCCTCATTCTGATCGAACTAATGACCGGCAAAAGCCCCACCGACGCAGAATTTGGCGTGCATGGAAGCATTGTGGAGTGGGGTCGTTACTGCTACTCAGACTGTCATCTTGATATGTGGATTGATCCAATAATTAGGGCACAGGTATCAAGCAATCAGAACCAGATGGTTGAAATCATGAACCTAGCCCTTCACTGCACTGCCACTGACCCTACTGCAAGACCTTGTGCAAGCGATGTATTGAAAACCCTAGAGTCTGTGCTGAGATCAAGTTCTTGTGTTTCAGGCCTGAAATTTTCTTCACCTATTTAG 2904 0.4366 MAKRGAQTCGLFIISMFFFFFSFGMSAREEIELLLSFKASINDPLGFLSNWNSSVDFCNWYGILCTNSSHVSSIDLSGKNISGEISPVFFGLPYIETVNLSNNALSGGIPGNISLCYSLRYLNLSNNNLTGSMPRGSASGLEALDLSNNVISGEIPADMGLFSRLKVLDLGGNFLVGKIPNSIANITSLEFLTLASNQLVGEIPRELGRMKSLKWIYLGYNNLSGGIPKEIGELTSLNHLDLVYNNLTGEIPSSLGNLSDLHFLFLYQNKLSGSIPPSIFDLKKLISLDLSDNSLSGEIPELVIQLQNLEILHLFANDFTGKIPRALASLPRLQILQLWSNKLSGEIPKNLGKQNNLTVLDLSTNNLSGEIPESLCNSGRLFKLILFSNSLEGEVPKSLSDCRSLRRVRLQSNHFSGELSSEFMKLPLVYFLDISDNNLTGKISDRRWDMPSLQMLSLARNRFFGNLPQSFGASKLENLDLSENQFSGAVPSSFGNLSELMQLKLSENMLSGDIPEELSSCKKLVSLNLSHNQLSGHIPASFSDMPVLGQLDLSQNQLSGKIPPNLGRVESLVQVNLSNNHLHGSLPSTGAFLAINSSSVSGNNLCGGDTTSGLPPCKRLKTPVWWFFVTCLLVVLVVLALAAFAVVFIRRRDGSELKRVEHEDGMWEMQFFDSKASKSITIKGILSSTTENNVISRGRKGISYKGKTKNGEMQFVVKEINDSNSIPSSFWTEFAQFGKLRHSNVVKLIGLCRSQKCGYLISEYIEGKNLSEVLRSLSWERRQKIAIGISKALRFLHCNCSPSMVVGNMSPQKIIIDGKDEPHLRLSPPLMVCTDFKCIISSAYFAPETRETKDTTEKSDIYGFGLILIELMTGKSPTDAEFGVHGSIVEWGRYCYSDCHLDMWIDPIIRAQVSSNQNQMVEIMNLALHCTATDPTARPCASDVLKTLESVLRSSSCVSGLKFSSPI* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0310 967 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 653 764 - -
Vvi4g0310 967 SMART LRR_typ_2 330 354 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 356 378 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 497 521 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 186 210 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 545 569 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 450 473 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 282 306 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 474 496 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 116 139 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 522 544 IPR003591 -
Vvi4g0310 967 SMART LRR_typ_2 234 258 IPR003591 -
Vvi4g0310 967 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 312 613 - -
Vvi4g0310 967 SUPERFAMILY Protein kinase-like (PK-like) 691 954 IPR011009 -
Vvi4g0310 967 FunFam LRR receptor-like serine/threonine-protein kinase 139 207 - -
Vvi4g0310 967 SUPERFAMILY RNI-like 70 368 - -
Vvi4g0310 967 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 765 959 - -
Vvi4g0310 967 Pfam Leucine Rich Repeat 356 377 IPR001611 GO:0005515
Vvi4g0310 967 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515
Vvi4g0310 967 Pfam Leucine Rich Repeat 236 258 IPR001611 GO:0005515
Vvi4g0310 967 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vvi4g0310 967 FunFam Leucine-rich repeat receptor-like kinase 29 138 - -
Vvi4g0310 967 Gene3D Ribonuclease Inhibitor 226 326 IPR032675 -
Vvi4g0310 967 Gene3D Phosphorylase Kinase; domain 1 652 764 - -
Vvi4g0310 967 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 303 - -
Vvi4g0310 967 Pfam Protein kinase domain 692 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0310 967 PANTHER OS10G0469600 PROTEIN 141 229 - -
Vvi4g0310 967 ProSiteProfiles Protein kinase domain profile. 689 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0310 967 Gene3D Ribonuclease Inhibitor 138 225 IPR032675 -
Vvi4g0310 967 Gene3D Ribonuclease Inhibitor 29 137 IPR032675 -
Vvi4g0310 967 Gene3D Ribonuclease Inhibitor 344 618 IPR032675 -
Vvi4g0310 967 Gene3D Transferase(Phosphotransferase) domain 1 765 959 - -
Vvi4g0310 967 SUPERFAMILY L domain-like 300 622 - -
Vvi4g0310 967 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Vvi4g0310 967 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0310 Vvi-Chr4 2682072 2685395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0310 12 949 Receptor kinase-like Gene Family AT2G25790 56.709 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vvi4g0310 Pkinase 7.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0310 - - vvi:100242450 1861.66