Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0291 ATGGAGGCGGCCATGGACGATTCTCAAGCATCCGCCGCTGAATCACAGGCTCCACCACCCCCTTCCTCGCCGCCAATCCAAGAGGAAGACTCCGGAGATGATGATAGCTTGCAATCCAAGGTTCAGAAGCTCATGGAGAAGATCACTTCTTCCCCTGATAACCCTAACCCTAGTGTCCTCCATGCCCTTTCTTCCATCCTCGAAACCCAAGAATCCAGGTACATGGAAGAGACAGGTCATTCATCCTTAAATAATGGTCGTGCTACTCATATTATTGGACGGCTGGGTAGCCTAGTCCGGGACAATGATGATTTTTTTGAGTTGATATCTTCAAAGTTTCTGTCTGAAAGTAGATACTCAATATCTGTTCAGGCAGCTGCTGCAAGGCTTCTTCTAATCTGTTCCCTGACTTTGGTGTATCCCCATGTTTTTGAAGAAACTGTCGTCTTGGAGAATATAAAAAATTGGGTGATGGATGAGAATGCCAGATTTTCTGGTGAAGATCGCAGCTGGAAGAATGACTCAGGGAGAAAGGAGGCCTCAGATTCTGAAATGTTGAGAACCTACTCTACTGGACTTCTTGCTTTATGTTTGGCTGGTGGTGGTCAAGTAGTGGAAGACGTATTGACATCTGGATTATCCGCCAAGCTGATGCGTTACCTTCGTACCCGAGTCCTTGGGGAGACAAATACAAGTCAAAAAGACGGTAGTCATATAGCAGAGAGTAAGAATACGCCTGGTGCTACTTGCATGAGAGGTAGAGATGAAGGTCGCAGTAGATTGCGGCTGGTTCTGGAAACAAATCATTTAGATGATCCTAGGATAATAGACGAAGGGTCTTTACATGATCAGAGTGTTGAAAGGGATCATGATAGAAGCATTGGTTGGCAAACGCATGGAGAAGAGTCCCGGGTTGATGGTGGAGAACCACCCAACAGTTTGGATGAAGATGATATGTATGAAGTGGATGCTGACGGCGAGGACAGATGGCATGGTCGTGATTTGCGTGATTTGAAGACAAAATTTGGAGATCATGATGAAAATGTGCGAGATGACTCAAAACGCAGGGCGAACCGTGGATTGTCAAGACTTAAGGGGAAGGGAAGAGTCAATGAGGGGGCTATAGAGAATGAGCATGCTTTGACCTCTCCAGGATCTGGTAGTAGGCTAGGACAGGGGCGTAGTATCAGAGACCGGAGTTTGTCAAGAAATTTAGACACAAAAAGAGCACCAGATGCCAAGAAGTGTTTTGGCAGGACCATTGCTGATGGTTTTCCCATGGAAAGAGAAGATAATGATGACCGCTTCCAGGAATGCAAAGTTGGATCCAAGGATATCTCTGATCTGGTAAAGAAAGCAGTTAAATCTGCTGAAGCTGAAGCTAAAGAAGCCAATGCACCTCTCGAAGCCATCAAAGCAGCTGGTGATGCTGCTGCTGAAGTTGTCAAAAGTGCAGCTTTGGAGGAATTCAAAACCACCAATGATGAGGAAGCTGCAATTTTAGCTGCTTCAAAAGCTGCATCTACTGTCATTGATGCTGCTAATGCAATTGAAGTTTCAAGGAGCTCCAGTAATATGAATGCTGATCCAATGAATTCAAGAGGTACTGAAACAGAAATCAATGAAGAGGTTGAAGAATTTTTCATTATGGATGCTGACTCCCTTGCACAGTTGAGAGAAAAATACTGCATTCAGTGCCTTGAGATATTAGGGGAATATGTTGAGGTTCTTGGCCCTGTTCTACATGAAAAGGGTGTAGACGTCTGTCTTGCACTATTGCAACGAAGTTCGAAATTGAAAGAGGCGTCAAAGCTTGCAATGCTTTTGCCTGATGTGCTAAAGTTAATCTGTGCTTTGGCAGCTCACCGGAAATTTGCTGCAGTATTTGTGGATCGTGGTGGCATGCAAAAACTGCTTGCTGTCCCAAGAGTTGCTCTCACCTTCTTCGGTCTTTCTTCTTGCTTATTTACCATTGGTTCTCTTCAGGGGATTATGGAACGTGTTTGTGCTCTTCCTTCAGAAGTTGTCCACCAAGTGGTTGAGTTAGCTTTGCAACTTCTTGAGTGTTCCCAGGATCAAGCCAGAAAAAATGCAGCTTTATTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATTCCTTTGATGCTCAAGATGGTTTACAGAAGTTGTTGAGCCTTCTACATGATGCCGCCTCGGTACGATCTGGAGTTAATTCTGGTGGGTTAGGCTTGTCCAATTCAGGGTCACTTCGAAATGATCGATCACCTCCAGAAGTATTAACATCATCAGAGAAGCAAATAGCTTATCATACCTGTGTTGCTTTGCGACAATATTTCAGAGCACACCTTCTCCTGCTTGTGGATTCCATTCGGCCAAATAAAAACAATCGAAGTGCAGCCCGTAATTTGCCTAGTGTAAGGGCGGCATATAAGCCACTTGACCTCAGTAATGAGGCTATGGATGCAGTTTTTCTTCAATTACAGAAGGATCGGAAACTTGGTCCTGCATTTGTAAGAGCTCGTTGGCTTGCGGTTGATAAGTTCTTAACCTCTAATGGTCATATTACCATGCTGGAGTTGTGTCAGGCACCACCTGTTGAACGATATCTGCATGACTTGCTTCAATATGCATTGGGTGTTCTGCACATTGTTACATTGGTACCTTACAGCCGCAAGCTGATTGTAAATGTCACATTAAGCAATAATCGTGTTGGTATTGCAGTCATTTTAGATGCGGCAAATGGTGCTAGTTTTGTGGACCCTGAGATTATTCAGCCAGCATTAAATGTGCTAGTGAATCTTGTTTGCCCTCCACCTTCAATCAGCCTTAAACCCCCTGTTCTTGCACAAGGCCAGCAGTCTGCTTCTGTCCAAACCTCTAATGGTCCTGCTATGGAGGCAAGAGATAGAAATGCAGAACGGAATATCTCAGATCGAGCTGCTAACATGCCTGGCCAGAGTGAACTAAGGGAGCGAAATGGGGAATCTGGTGTGGTAGATCGAGGCAGCTCTGCTGTACTTAGTGCAGTATCCATCAATAGTACTTCACAAACACCTATTCCAACCATTGCTTCAGGATTAGTTGGAGACCGTAGAATATCTTTAGGCGCTGGAGCAGGGTGTGCTGGTCTTGCTGCACAATTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGAGCCAATAGTGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGTATAGTTTCACCTCCTGCTACCCTTGACTGCCTTAGAGCTCTTGCATGCCGAGTCCTGCTGGGTTTAGCTAGAGATGATGCAATAGCACATATATTGACAAAGCTTCAGGTTGGGAAAAAGCTATCAGAACTAATCCGAGATTCAGGCAGCCAGACATCGGGAAATGAACAAGGCCGGTGGCAAGCTGAACTTGCCCAGGTGGCAATTGAGCTAATTGGGATTGTAACAAATTCAGGGCGTGCAAGTACATTAGCAGCTACAGATGCTGCTACCCCTACCTTGAGGCGCATAGAGAGAGCAGCTATAGCTGCTGCCACACCTATTACTTATCATTCCAGGGAACTCTTACTCCTTATCCATGAACACCTGCAGGCATCTGGTTTGAGCACAACTGCTGCTCAATTGCTTAAAGAGGCTCAGTTGACACCTTTGCCATCCTTGGCAGCCCCATCATCTCTCGTGCATCAAGCATCTTCCCAAGAAACTCCATCTATGCAACTTCAGTGGCCATCTGGTCGCATTGCTGGTGGATTTCTCTCCAATAAATTGAAGCCGACCACAAAGGATGAAGATTCCTGTTTGAATTCTGATTCATCTGTGTCTTCCTCAAAGAAGAAGCCACTGGTTTTCTCATCTACTCTCAGCTTTCAATTCAGAAATCAGCCTCAATCCCATGATGCCCAATCTCCAGCAATCAGCAAAGTTTTCAGTACTTCAAAAAAGTCTTCAGCACCTGCAAGTGTACCAGAAACTCCATCAGTAACTACATCAAAACCAAATTTGGATGCTGAGTCCCAATATAAGACTCCAATTATATTGCCAATGAAAAGGAAGCTAACGGAGTTAAAGGATGTCGGGTTGGCATCGTCAGTGAAGCGACTCAACACCAGTGAGCTTGGACTTCATTCACCTGTTTGTTCAACACCAAATACTGTCCGAAAAAGCAATCTACTGAATGATGCGATTGGATTCTCAACACCATGTTGTACACCAAGAGATCAATATGGGCGGCCAACACCAAGTAGTGTTCTAACTGATAACTTAGATGATAACCAATGTGGTATTCCTCATTTGGGTCAGATGACACCTTCTTCCTTCCAACTTGGATCTCTGAATGACCCACATACTGGCAACACCGAAAGGCTTACCCTCGACTCTCTTGTTGTCCAGTATCTAAAGCACCAGCATCGCCAGTGCCCAGCACCAATAACAACGTTACCACCACTCTCTCTCTTACACCCACATATTTGTCCTGAACCAAGACGAAGCCTTGATGCTCCATCAAATGTAACTGCCCGGCTTAGCACACGTGAGTTTAGAAATGTGCATGGTGGAATCCATGGAAACAGGAGGGATCGTCAATTCATTTACAGCAGATTCAGGCCCTGGAGAACTTGCCGGGATGATGGTAATGGCCTTTTGACATCTCTTGCTTTTCTAGGGGACTCTGCACAGATTGCAGCTGGAAGTCATTCTGGAGAGCTTAAATTTTTTGACTGCAACAGCAGCACTATGCTAGAGAGTTTCACAGGCCACCAGTATCCTTTGACACTAGTCCAGTCCTATCTTTCTGGTGACACACAGCTGGTGCTCTCATCAAGCTCCCATGATGTGCGACTGTGGGATGCCTCTTCGATATCAGGTGGCCCTAGACATCCATTTGATGGGTGCAAGGCTGCTAGATTTAGCAATTCTGGGACCATATTTGCAGCGCTATCATCAGAGTCATCTCGACGAGAAATTCTTGTGTATGACATCCAGACCCTCCAATTGGATCTCAAACTGGCTGACACTTCTGCCAGCTCTGCAGGTCGAGGCCATGTGTATCCACTCATACACTTCAGTCCTTCAGACACCATGCTTCTCTGGAATGGGGTCTTATGGGATAGGCGAGGGTCTGGCCCTGTTCATCGTTTTGATCAGTTTACAGATTATGGGGGTGGGGGCTTCCATCCTGCTGGAAATGAGGTGATTATAAATTCTGAGGTCTGGGACCTCCGGAAGTTTAGGCTCCTCCGAACCGTGCCTTCGTTGGATCAAACAGTAATAACTTTTAATTCTCGTGGAGATGTGATTTATGCCATCCTGAGGAGAAATCTTGAGGACATAATGTCAGCAGTTCACAGCCGCCGTGCCAAGCATCCTCTCTTTTCTGCATTTCGCACTGTTGATGCTGTCAACTACTCTGACATTGCCACGATTACCGTAGACCGCTGTGTGCTTGACTTTGCAACAGAGCCAACCGACTCCTTTGTGGGGTTGGTTTCAATGGACGATCATGATGAGATGTTTTCTTCTGCTAGAATGTATGAAATTGGGCGGCGCAGGCCAACAGATGATGACTCTGATCCTGATGATGCAGAAAGCGAGGAAGATGATGAAGATGAGGATGAGGATGCAGATGAGGACCCATTACTGGGTCCTGCACTTGATGGGGATGGAGAGAGCGATGGTGATGACTTGAGCAATGATGATGACAGCTTGGGTGATTTTGAAGAGGATGACGACGATGATGATGATGGGGATTTTGTGATGGATGATGCTGACTTTGATGGGGGAGGTGGAATACTGGAGTTAGTGACGGAGGGAGATGAGGATGACAATGACAGTGAGGTGGTGGAATCCTTTAGCAGTGGTGATGAGGAAGATTTTGGGGACAATGGTTTCGGCTTCTAG 5904 0.4571 MEAAMDDSQASAAESQAPPPPSSPPIQEEDSGDDDSLQSKVQKLMEKITSSPDNPNPSVLHALSSILETQESRYMEETGHSSLNNGRATHIIGRLGSLVRDNDDFFELISSKFLSESRYSISVQAAAARLLLICSLTLVYPHVFEETVVLENIKNWVMDENARFSGEDRSWKNDSGRKEASDSEMLRTYSTGLLALCLAGGGQVVEDVLTSGLSAKLMRYLRTRVLGETNTSQKDGSHIAESKNTPGATCMRGRDEGRSRLRLVLETNHLDDPRIIDEGSLHDQSVERDHDRSIGWQTHGEESRVDGGEPPNSLDEDDMYEVDADGEDRWHGRDLRDLKTKFGDHDENVRDDSKRRANRGLSRLKGKGRVNEGAIENEHALTSPGSGSRLGQGRSIRDRSLSRNLDTKRAPDAKKCFGRTIADGFPMEREDNDDRFQECKVGSKDISDLVKKAVKSAEAEAKEANAPLEAIKAAGDAAAEVVKSAALEEFKTTNDEEAAILAASKAASTVIDAANAIEVSRSSSNMNADPMNSRGTETEINEEVEEFFIMDADSLAQLREKYCIQCLEILGEYVEVLGPVLHEKGVDVCLALLQRSSKLKEASKLAMLLPDVLKLICALAAHRKFAAVFVDRGGMQKLLAVPRVALTFFGLSSCLFTIGSLQGIMERVCALPSEVVHQVVELALQLLECSQDQARKNAALFFAAAFVFRAVLDSFDAQDGLQKLLSLLHDAASVRSGVNSGGLGLSNSGSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKNNRSAARNLPSVRAAYKPLDLSNEAMDAVFLQLQKDRKLGPAFVRARWLAVDKFLTSNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPYSRKLIVNVTLSNNRVGIAVILDAANGASFVDPEIIQPALNVLVNLVCPPPSISLKPPVLAQGQQSASVQTSNGPAMEARDRNAERNISDRAANMPGQSELRERNGESGVVDRGSSAVLSAVSINSTSQTPIPTIASGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANSGIKVLLHLLQPRIVSPPATLDCLRALACRVLLGLARDDAIAHILTKLQVGKKLSELIRDSGSQTSGNEQGRWQAELAQVAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSTTAAQLLKEAQLTPLPSLAAPSSLVHQASSQETPSMQLQWPSGRIAGGFLSNKLKPTTKDEDSCLNSDSSVSSSKKKPLVFSSTLSFQFRNQPQSHDAQSPAISKVFSTSKKSSAPASVPETPSVTTSKPNLDAESQYKTPIILPMKRKLTELKDVGLASSVKRLNTSELGLHSPVCSTPNTVRKSNLLNDAIGFSTPCCTPRDQYGRPTPSSVLTDNLDDNQCGIPHLGQMTPSSFQLGSLNDPHTGNTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHICPEPRRSLDAPSNVTARLSTREFRNVHGGIHGNRRDRQFIYSRFRPWRTCRDDGNGLLTSLAFLGDSAQIAAGSHSGELKFFDCNSSTMLESFTGHQYPLTLVQSYLSGDTQLVLSSSSHDVRLWDASSISGGPRHPFDGCKAARFSNSGTIFAALSSESSRREILVYDIQTLQLDLKLADTSASSAGRGHVYPLIHFSPSDTMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRTVPSLDQTVITFNSRGDVIYAILRRNLEDIMSAVHSRRAKHPLFSAFRTVDAVNYSDIATITVDRCVLDFATEPTDSFVGLVSMDDHDEMFSSARMYEIGRRRPTDDDSDPDDAESEEDDEDEDEDADEDPLLGPALDGDGESDGDDLSNDDDSLGDFEEDDDDDDDGDFVMDDADFDGGGGILELVTEGDEDDNDSEVVESFSSGDEEDFGDNGFGF* 1968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1228 1247 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1295 1338 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 231 253 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 42 59 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 343 374 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1 59 - -
Vvi4g0291 1967 PANTHER VPRBP PROTEIN-RELATED 27 1965 IPR033270 GO:0016567
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 381 398 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1936 1957 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1228 1245 - -
Vvi4g0291 1967 Gene3D - 1536 1860 IPR015943 GO:0005515
Vvi4g0291 1967 SUPERFAMILY WD40 repeat-like 1546 1772 IPR036322 GO:0005515
Vvi4g0291 1967 ProSiteProfiles LIS1 homology (LisH) motif profile. 1187 1219 IPR006594 GO:0005515
Vvi4g0291 1967 SMART Lish 1187 1219 IPR006594 GO:0005515
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 953 999 - -
Vvi4g0291 1967 FunFam DDB1-and CUL4-associated factor homolog 1 1533 1860 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1859 1923 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1254 1280 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 343 407 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 1845 1967 - -
Vvi4g0291 1967 SUPERFAMILY ARM repeat 181 936 IPR016024 -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 275 328 - -
Vvi4g0291 1967 MobiDBLite consensus disorder prediction 275 311 - -
Vvi4g0291 1967 SMART WD40_4 1578 1618 IPR001680 GO:0005515
Vvi4g0291 1967 SMART WD40_4 1535 1575 IPR001680 GO:0005515
Vvi4g0291 1967 SMART WD40_4 1623 1661 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0291 Vvi-Chr4 2534773 2547915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0291 1550 1768 U-box Gene Family AT2G33340 24.380 3.98e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0291 K11789 - vvi:100254299 3508.77