Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0288 ATGACAATTGTTCATCATACTGTATCAAGAGGTACATTGAGACATCCAGAGGAAGATATCGAGCCAAGAACTGTATATGTAACAAATGTACATTTTGCAGCAACTAAAGAAGCTTTATCAAATCACTTTGCCAAATGTGGGTTGGTGGTCAATGTTGTTATTTTGACTGATGAAACAATTGCCCAACCAAAGAGGTCTGCTTTCATTACTTTTGCCAGTGTGGAGTCTGTTAACAAAGCATTGGCATTGAGTGGGACCTCATTTTTTTCAAGAACTGTAAAGGTTTTTAGAAAGGCAGACATGGCCACTGGAAAATCTGCACCACCCCAGGATGCTGGAATGCCAGTGCAAGCACGGTTTACTCACATCAAGGGAAAGATTGCCGTTGACAGACCTCTCTATTCCACCCCTCATCTACAATGGCGACGAGAATCAATCCCCACTCCATCTGAACCATCAGCTTCAGCAAACATTCAAGAGAAATCCCCCTCTGAATCATCAGCTTCAGCAAATATTCAAAAGAAATCCACCGCAGGCTCTGGCTCCCAGCAGCCTTTTCCAAGTTAA 567 0.4286 MTIVHHTVSRGTLRHPEEDIEPRTVYVTNVHFAATKEALSNHFAKCGLVVNVVILTDETIAQPKRSAFITFASVESVNKALALSGTSFFSRTVKVFRKADMATGKSAPPQDAGMPVQARFTHIKGKIAVDRPLYSTPHLQWRRESIPTPSEPSASANIQEKSPSESSASANIQKKSTAGSGSQQPFPS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0288 188 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 148 - -
Vvi4g0288 188 Gene3D - 6 106 IPR012677 -
Vvi4g0288 188 SMART rrm1_1 24 96 IPR000504 GO:0003723
Vvi4g0288 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Vvi4g0288 188 MobiDBLite consensus disorder prediction 144 188 - -
Vvi4g0288 188 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Vvi4g0288 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0288 14 120 Eukaryotic Initiation Factors Gene Family AT2G36660 24.545 7.65e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0288 - - vvi:100854295 353.599