Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0287 ATGGTGGAGGGTCCGAAATTCACTGGAATTATTGGCGGAGGGGGAAATCACAACCATGATAACAATTACTTTGATTTCACTCAAGGCTTCTATCAGAAACTTGGGGAGGACTCCAACATGTCTATTGACAGTTTGCAGACCAGTAATGCTGGCTTGTCCGTGTCGATGTCTGTGGACAACAGTAGCGTTGGGTCCAATGATTCTCTTACCCATATCCTAAACCACCCCGGTCTGAAGCCTGTGGCTACCCACAATTATTCTGTGGGGCACAGCGTCCTTCGTCCCGGGAAAGGTAAGGTCACCCATGCTCTGAATGAAGACGCACTTGCTCGAGCTTTGATGGATACTAGGTATCCAACTGAGGGTTTGGAGAATTATGATGAATGGACCATTGATTTGCGCAAGCTCAACATGGGGACGGCTTTTGCTCAAGGGGCTTTTGGGAAGTTATACAGGGGAGAGTATAATGGGGACGATGTGGCGATTAAGATTTTGGAAAGGCCGGAGAATAGTCCTGAGAGGGCACAGGTGATGGAGCAACAATTCCAGCAAGAGGTGATGATGCTTGCGACACTGAAACACCCCAATATTGTGAGGTTTATTGGGGCATGCCGTAAGCCCCTTGCTTGGTGCATTGTGACTGAATATGCCAAGGGAGGGTCAGTTCGGCAGTTCTTGATGAGGAGGCAGAATAGGTCTGTGCCGCTGAAATTGGCTGTCAAGCAGGCATTGGATGTTGCAAGGGGGATGGCATATGTGCATGGACTCGGGTTCATCCACAGGGACCTGAAGTCAGATAACCTCTTGATTGCTGCTGATAAATCCATTAAGATTGCTGATTTTGGTGTTGCCCGGATTGAGGTGCAAACCGAAGGAATGACACCAGAGACAGGGACGTATCGCTGGATGGCCCCAGAGATGATCCAGCACAGGCCATACACTCAGAAGGTAGATGTCTACAGCTTTGGAATTGTCCTGTGGGAGCTCATCACAGGCTTGCTTCCCTTCCAGAACATGACTGCAGTGCAGGCAGCCTTTGCTGTGGTGAACAAGGGAGTGAGGCCAATTATCCCAAGCGACTGTCTTCCTGTTCTAAGCGATATCATGACCCGCTGCTGGGACGCCAATCCTGAAGTGCGTCCTCCCTTCACTGAGGTTGTCAGGATGCTTGAGAATGCAGAAATTGAGATCATGACAACTGTGCGGAAGGCACGCTTTAGGTGCTGCATGACCCAGCCTATGACAACCGACTGA 1254 0.4992 MVEGPKFTGIIGGGGNHNHDNNYFDFTQGFYQKLGEDSNMSIDSLQTSNAGLSVSMSVDNSSVGSNDSLTHILNHPGLKPVATHNYSVGHSVLRPGKGKVTHALNEDALARALMDTRYPTEGLENYDEWTIDLRKLNMGTAFAQGAFGKLYRGEYNGDDVAIKILERPENSPERAQVMEQQFQQEVMMLATLKHPNIVRFIGACRKPLAWCIVTEYAKGGSVRQFLMRRQNRSVPLKLAVKQALDVARGMAYVHGLGFIHRDLKSDNLLIAADKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGLLPFQNMTAVQAAFAVVNKGVRPIIPSDCLPVLSDIMTRCWDANPEVRPPFTEVVRMLENAEIEIMTTVRKARFRCCMTQPMTTD* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0287 417 Gene3D Phosphorylase Kinase; domain 1 125 218 - -
Vvi4g0287 417 FunFam Serine/threonine-protein kinase isoform 1 126 218 - -
Vvi4g0287 417 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 392 - -
Vvi4g0287 417 Pfam Protein tyrosine and serine/threonine kinase 137 390 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 FunFam serine/threonine-protein kinase HT1 219 412 - -
Vvi4g0287 417 SUPERFAMILY Protein kinase-like (PK-like) 118 390 IPR011009 -
Vvi4g0287 417 SMART serkin_6 136 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0287 417 CDD STKc_MAP3K-like 143 390 - -
Vvi4g0287 417 PRINTS Tyrosine kinase catalytic domain signature 317 339 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 PRINTS Tyrosine kinase catalytic domain signature 214 227 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 PRINTS Tyrosine kinase catalytic domain signature 298 308 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 PRINTS Tyrosine kinase catalytic domain signature 252 270 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 PRINTS Tyrosine kinase catalytic domain signature 361 383 IPR001245 GO:0004672|GO:0006468
Vvi4g0287 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vvi4g0287 417 ProSiteProfiles Protein kinase domain profile. 136 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0287 417 Gene3D Transferase(Phosphotransferase) domain 1 219 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0287 Vvi-Chr4 2501412 2518174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0287 1 417 MAP Kinase Kinase Kinase AT2G24360 82.974 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi4g0287 PK_Tyr_Ser-Thr 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0287 - - vvi:100257625 807.364