Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0279 ATGCAGCAGAGGTTTAAGCAGCAGCAGCAACAACAACAAACCCTAATGCAGCAAGCATTGCTTCAGCAGCAGCATATGTACCACCCGGGTGTACTCGCTGCGGCTGCCATGTCTCAAATGGAGCCTGTTCCAAGCGGCAACCTGCCTCCTGGCTTTGATTCATCGTCATGCCGCAGTGTTTATGTAGGTAATATTCATGTAAATGTCACTGAGAAACTTCTTGCAGAAGTTTTCCAAAGTGCTGGTCCTCTTGCTGGATGCAAACTCATTAGAAAGGATAAGTCGTCATATGGTTTTGTGGACTACCTTGATCGAGCATCTGCTAGTCTTGCAATAATGACATTGCATGGACGTCAAGTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAGTGGCCAGAGGGAAGACACGTCAGGGCACTTTAATATATTTGTTGGTGATTTGAGCCCAGAGGTTACTGACGCAACTTTATATGCCTGCTTCTCAGTTTTTGCTAGTTGTTCAGATGCAAGGGTCATGTGGGATCACAAAACTGGACGGTCAAAAGGATATGGCTTTGTTTCTTTCCGTAATCAGCAGGATGCACAGAGTGCCATCAATGACTTGAGTGGTAAATGGCTTGGGAATAGGCAAATAAGATGCAACTGGGCAACTAAAGGTGCTGGCTTTAATGAGGACAAGCAGGTTAATGAAAATCAAAACGCAGTTGTACTTACTAATGGATCTTCAGATGGAAGTCAAGAGAATACAAATGAGGAGGCCCCTGAAAATAATCCAGCATACACTACTGTCTATGTTGGCAACCTTTCTCATGAGGTAACTCAAGCTGAACTTCACTGTCAGTTTCATGCTCTTGGAGCTGGGGTTATTGAGGAAGTGCGCATCCAGAGGGATAAAGGTTTTGGGTTTGTCAGGTACCACACCCATGAAGAAGCAGCCTTGGCCATTCAGATGGCGAATGGAAGGATAGTTCGTGGAAAATCCATGAAGTGCTCATGGGGTAGCAAGCCAACGCCTCTCGGTACAGCTTCTAATCCCCTACCTCCTCCAGCTCAACCATATCAGATCCTTCCTACTGCTGGCATTAACCAAGGCTACTCACCAGCAGAGTTGTTGGCCTATCAGCGCCAGCTTGCCTTAAGCCAAGCTGCTGCATCCAGCCTCTCGGGCCAAGCTCTTATGCAGATGACTGGACATCATGGTCTAGCTGCAGGTTCCATGGGTGTGAGCTCTGGTGGCACCCAAGCTATGTATGATGGATATCCCAATAATTCATCAGGCCAGCAGCTGATGTATTACCATTAA 1311 0.4668 MQQRFKQQQQQQQTLMQQALLQQQHMYHPGVLAAAAMSQMEPVPSGNLPPGFDSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSSYGFVDYLDRASASLAIMTLHGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYHTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPLGTASNPLPPPAQPYQILPTAGINQGYSPAELLAYQRQLALSQAAASSLSGQALMQMTGHHGLAAGSMGVSSGGTQAMYDGYPNNSSGQQLMYYH* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0279 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Vvi4g0279 436 SUPERFAMILY RNA-binding domain, RBD 137 225 IPR035979 GO:0003676
Vvi4g0279 436 SMART rrm1_1 59 128 IPR000504 GO:0003723
Vvi4g0279 436 SMART rrm1_1 144 217 IPR000504 GO:0003723
Vvi4g0279 436 SMART rrm1_1 265 334 IPR000504 GO:0003723
Vvi4g0279 436 Gene3D - 142 222 IPR012677 -
Vvi4g0279 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Vvi4g0279 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 331 IPR000504 GO:0003723
Vvi4g0279 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Vvi4g0279 436 CDD RRM2_PUB1 142 221 - -
Vvi4g0279 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
Vvi4g0279 436 FunFam Nucleolysin TIAR-like protein 142 239 - -
Vvi4g0279 436 Gene3D - 241 342 IPR012677 -
Vvi4g0279 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 338 IPR000504 GO:0003723
Vvi4g0279 436 MobiDBLite consensus disorder prediction 240 261 - -
Vvi4g0279 436 SUPERFAMILY RNA-binding domain, RBD 251 340 IPR035979 GO:0003676
Vvi4g0279 436 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Vvi4g0279 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 341 - -
Vvi4g0279 436 FunFam Oligouridylate-binding protein 1C 241 342 - -
Vvi4g0279 436 FunFam Nucleolysin TIAR-like protein 1 141 - -
Vvi4g0279 436 Gene3D - 1 141 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0279 Vvi-Chr4 2408234 2428104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0279 54 332 Eukaryotic Initiation Factors Gene Family AT3G16380 27.703 1.04e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0279 K13201 - vvi:100245579 820.076