Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g0279 | ATGCAGCAGAGGTTTAAGCAGCAGCAGCAACAACAACAAACCCTAATGCAGCAAGCATTGCTTCAGCAGCAGCATATGTACCACCCGGGTGTACTCGCTGCGGCTGCCATGTCTCAAATGGAGCCTGTTCCAAGCGGCAACCTGCCTCCTGGCTTTGATTCATCGTCATGCCGCAGTGTTTATGTAGGTAATATTCATGTAAATGTCACTGAGAAACTTCTTGCAGAAGTTTTCCAAAGTGCTGGTCCTCTTGCTGGATGCAAACTCATTAGAAAGGATAAGTCGTCATATGGTTTTGTGGACTACCTTGATCGAGCATCTGCTAGTCTTGCAATAATGACATTGCATGGACGTCAAGTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAGTGGCCAGAGGGAAGACACGTCAGGGCACTTTAATATATTTGTTGGTGATTTGAGCCCAGAGGTTACTGACGCAACTTTATATGCCTGCTTCTCAGTTTTTGCTAGTTGTTCAGATGCAAGGGTCATGTGGGATCACAAAACTGGACGGTCAAAAGGATATGGCTTTGTTTCTTTCCGTAATCAGCAGGATGCACAGAGTGCCATCAATGACTTGAGTGGTAAATGGCTTGGGAATAGGCAAATAAGATGCAACTGGGCAACTAAAGGTGCTGGCTTTAATGAGGACAAGCAGGTTAATGAAAATCAAAACGCAGTTGTACTTACTAATGGATCTTCAGATGGAAGTCAAGAGAATACAAATGAGGAGGCCCCTGAAAATAATCCAGCATACACTACTGTCTATGTTGGCAACCTTTCTCATGAGGTAACTCAAGCTGAACTTCACTGTCAGTTTCATGCTCTTGGAGCTGGGGTTATTGAGGAAGTGCGCATCCAGAGGGATAAAGGTTTTGGGTTTGTCAGGTACCACACCCATGAAGAAGCAGCCTTGGCCATTCAGATGGCGAATGGAAGGATAGTTCGTGGAAAATCCATGAAGTGCTCATGGGGTAGCAAGCCAACGCCTCTCGGTACAGCTTCTAATCCCCTACCTCCTCCAGCTCAACCATATCAGATCCTTCCTACTGCTGGCATTAACCAAGGCTACTCACCAGCAGAGTTGTTGGCCTATCAGCGCCAGCTTGCCTTAAGCCAAGCTGCTGCATCCAGCCTCTCGGGCCAAGCTCTTATGCAGATGACTGGACATCATGGTCTAGCTGCAGGTTCCATGGGTGTGAGCTCTGGTGGCACCCAAGCTATGTATGATGGATATCCCAATAATTCATCAGGCCAGCAGCTGATGTATTACCATTAA | 1311 | 0.4668 | MQQRFKQQQQQQQTLMQQALLQQQHMYHPGVLAAAAMSQMEPVPSGNLPPGFDSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSSYGFVDYLDRASASLAIMTLHGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYHTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPLGTASNPLPPPAQPYQILPTAGINQGYSPAELLAYQRQLALSQAAASSLSGQALMQMTGHHGLAAGSMGVSSGGTQAMYDGYPNNSSGQQLMYYH* | 437 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g0279 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 143 | 221 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 137 | 225 | IPR035979 | GO:0003676 | |
Vvi4g0279 | 436 | SMART | rrm1_1 | 59 | 128 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | SMART | rrm1_1 | 144 | 217 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | SMART | rrm1_1 | 265 | 334 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | Gene3D | - | 142 | 222 | IPR012677 | - | |
Vvi4g0279 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 145 | 215 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 331 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 60 | 126 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | CDD | RRM2_PUB1 | 142 | 221 | - | - | |
Vvi4g0279 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 58 | 132 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | FunFam | Nucleolysin TIAR-like protein | 142 | 239 | - | - | |
Vvi4g0279 | 436 | Gene3D | - | 241 | 342 | IPR012677 | - | |
Vvi4g0279 | 436 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 338 | IPR000504 | GO:0003723 | |
Vvi4g0279 | 436 | MobiDBLite | consensus disorder prediction | 240 | 261 | - | - | |
Vvi4g0279 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 251 | 340 | IPR035979 | GO:0003676 | |
Vvi4g0279 | 436 | SUPERFAMILY | RNA-binding domain, RBD | 42 | 136 | IPR035979 | GO:0003676 | |
Vvi4g0279 | 436 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 46 | 341 | - | - | |
Vvi4g0279 | 436 | FunFam | Oligouridylate-binding protein 1C | 241 | 342 | - | - | |
Vvi4g0279 | 436 | FunFam | Nucleolysin TIAR-like protein | 1 | 141 | - | - | |
Vvi4g0279 | 436 | Gene3D | - | 1 | 141 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi4g0279 | Vvi-Chr4 | 2408234 | 2428104 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi4g0279 | 54 | 332 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 27.703 | 1.04e-21 | 95.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g0279 | K13201 | - | vvi:100245579 | 820.076 |